Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACEPMZ_RS13470 Genome accession   NZ_CP168739
Coordinates   2870385..2872577 (-) Length   730 a.a.
NCBI ID   WP_020832656.1    Uniprot ID   A0ABX7ZR68
Organism   Ralstonia pseudosolanacearum strain RUN0320     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2865385..2877577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPMZ_RS13440 (ACEPMZ_13440) - 2865533..2866756 (+) 1224 WP_020832651.1 diaminopropionate ammonia-lyase -
  ACEPMZ_RS13445 (ACEPMZ_13445) - 2866947..2867888 (-) 942 WP_354536049.1 LysR family transcriptional regulator -
  ACEPMZ_RS13450 (ACEPMZ_13450) - 2868039..2869169 (+) 1131 WP_354536029.1 DSD1 family PLP-dependent enzyme -
  ACEPMZ_RS13455 (ACEPMZ_13455) - 2869314..2869487 (+) 174 WP_162903483.1 hypothetical protein -
  ACEPMZ_RS13460 (ACEPMZ_13460) - 2869711..2870151 (+) 441 WP_011002617.1 hypothetical protein -
  ACEPMZ_RS13465 (ACEPMZ_13465) - 2870163..2870366 (+) 204 WP_058908292.1 GDCCVxC domain-containing (seleno)protein -
  ACEPMZ_RS13470 (ACEPMZ_13470) recG 2870385..2872577 (-) 2193 WP_020832656.1 ATP-dependent DNA helicase RecG Machinery gene
  ACEPMZ_RS13475 (ACEPMZ_13475) queA 2872654..2873742 (+) 1089 WP_020832657.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  ACEPMZ_RS13480 (ACEPMZ_13480) tgt 2873736..2874887 (+) 1152 WP_016723717.1 tRNA guanosine(34) transglycosylase Tgt -
  ACEPMZ_RS13485 (ACEPMZ_13485) yajC 2874999..2875328 (+) 330 WP_011002621.1 preprotein translocase subunit YajC -
  ACEPMZ_RS13490 (ACEPMZ_13490) secD 2875450..2877330 (+) 1881 WP_011002622.1 protein translocase subunit SecD -

Sequence

Protein


Download         Length: 730 a.a.        Molecular weight: 79215.31 Da        Isoelectric Point: 9.5031

>NTDB_id=936974 ACEPMZ_RS13470 WP_020832656.1 2870385..2872577(-) (recG) [Ralstonia pseudosolanacearum strain RUN0320]
MPARARSATAAVPAPDADTAPAAGPRRAPAAKPADKPAAKTARPADKLAKLGLRRDVDLVLHLPMRYEDETALLTIAEAV
ARANTGWAAQVDGVVTRNEVAFRPRRQLVVHIADDSGELVLRFLNFYGSQVKQMAEGARLRVRGEVRGGFFGAEMVHPAV
RAVTPDEPLPDRLTPVYPSTAGVAQAYLRKAILNALGRTPLPETLPDSLLRGPLAPLKLMAPAEAVRLLHQPTPDVDEHS
LVERTHPAWLRIKFDELLAQQLSLKRAQAARRTRSAPVLRAGGADGLLARFLAALPFKLTGAQARVWEEIRADLARPYPM
QRLLQGDVGSGKTVIAALAACQAIDAGRQAALMAPTELLAEQHYRKLSAWLAPLGVDIVWLAGSLKRKQKDEAAARVAAG
TAQLVIGTHALIQDTVTFARLGLAVVDEQHRFGVAQRLALRGKAGGTDTPIAETAQLVPHQLMMSATPIPRTLAMTYYAD
LDVSAIDELPPGRTPVVTRLVNDARRDEVIERIHAAAREGRQVYWVCPLIEESEALQLQTAVETFETLSQSLAGLKVGLV
HGRLPSADKAAVMSAFAGGELHVLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCILLYQAPLS
PTAKQRLQTMRETTDGFEIARRDLDIRGPGEFLGARQSGEAMLRFADLNHDAWMVEFAQGAAEQMLARFPDAVEAHLKRW
LGEREHYLRV

Nucleotide


Download         Length: 2193 bp        

>NTDB_id=936974 ACEPMZ_RS13470 WP_020832656.1 2870385..2872577(-) (recG) [Ralstonia pseudosolanacearum strain RUN0320]
GTGCCCGCTCGCGCCCGCTCCGCCACCGCCGCCGTTCCCGCGCCCGATGCCGACACGGCGCCGGCCGCCGGCCCCAGGCG
CGCGCCCGCGGCGAAGCCCGCGGACAAGCCGGCCGCCAAGACCGCCCGCCCCGCCGACAAGCTGGCCAAGCTCGGCCTGC
GCCGCGACGTCGATCTCGTGCTGCACCTGCCGATGCGCTACGAGGACGAAACCGCGCTGCTGACCATCGCCGAGGCCGTC
GCCCGCGCCAATACCGGCTGGGCCGCGCAGGTGGATGGGGTGGTGACGCGCAACGAAGTGGCGTTCCGGCCCCGCCGGCA
ACTGGTGGTGCACATCGCCGACGATTCCGGCGAGCTGGTGCTGCGCTTTCTCAACTTCTACGGCAGCCAGGTCAAGCAGA
TGGCCGAGGGTGCGCGCCTGCGCGTGCGCGGCGAGGTGCGCGGCGGCTTCTTCGGCGCGGAGATGGTGCATCCGGCGGTG
CGCGCCGTGACGCCGGACGAGCCGCTGCCCGACCGCCTGACCCCGGTCTATCCCAGCACCGCCGGCGTGGCGCAGGCGTA
TCTGCGCAAGGCCATCCTGAATGCGCTCGGCCGCACGCCGCTGCCCGAGACCCTGCCGGACAGCCTGTTGCGCGGGCCGC
TGGCGCCGCTCAAGCTGATGGCGCCCGCCGAGGCCGTCCGCCTGTTGCACCAGCCCACGCCCGACGTGGACGAGCACAGC
CTGGTCGAACGCACCCACCCGGCCTGGCTGCGCATCAAGTTCGACGAACTGCTGGCGCAGCAACTGTCGCTCAAGCGCGC
CCAGGCCGCGCGCCGCACGCGCAGCGCGCCGGTGCTGCGGGCCGGCGGCGCGGACGGGCTGCTCGCGCGCTTCCTGGCGG
CGCTGCCCTTCAAGCTGACCGGCGCGCAGGCCCGCGTGTGGGAGGAGATCCGCGCGGACCTCGCCCGGCCGTACCCGATG
CAGCGGCTGCTGCAGGGCGACGTGGGCAGCGGCAAGACCGTCATCGCCGCGCTGGCCGCGTGCCAGGCCATCGACGCCGG
CCGGCAGGCCGCGCTGATGGCGCCGACCGAACTGCTGGCCGAGCAGCACTACCGCAAGCTGTCGGCCTGGCTCGCGCCGC
TGGGCGTGGACATCGTCTGGCTGGCCGGCAGCCTCAAGCGCAAGCAGAAGGACGAGGCCGCTGCGCGCGTGGCCGCCGGC
ACCGCGCAGCTGGTGATCGGCACCCATGCGCTGATCCAGGACACCGTGACCTTCGCCCGCCTGGGGCTGGCCGTGGTGGA
CGAGCAGCACCGCTTCGGCGTGGCGCAGCGGCTGGCGCTGCGCGGCAAGGCCGGCGGCACCGACACGCCCATCGCCGAGA
CCGCGCAGCTGGTGCCGCACCAGCTGATGATGTCGGCCACGCCGATCCCGCGCACGCTGGCGATGACGTACTACGCCGAC
CTCGACGTCTCGGCCATCGACGAGCTGCCGCCCGGCCGCACGCCGGTGGTCACGCGCCTGGTCAACGATGCGCGCCGCGA
CGAGGTGATCGAACGCATCCACGCCGCCGCGCGCGAGGGGCGGCAGGTCTACTGGGTCTGTCCCCTGATCGAAGAAAGCG
AGGCGCTGCAGCTGCAGACCGCCGTCGAGACGTTCGAGACGCTGTCGCAGAGCCTGGCCGGCCTCAAGGTCGGGCTGGTG
CACGGGCGCCTGCCGTCCGCCGACAAGGCCGCGGTGATGAGCGCCTTCGCCGGCGGCGAGCTGCACGTGCTGGTGGCGAC
CACCGTGATCGAAGTGGGCGTCGACGTGCCCAACGCCTCGCTGATGGTGATCGAGCACGCCGAGCGCTTCGGGCTGGCGC
AGCTCCATCAGCTGCGCGGACGGGTCGGGCGCGGCACGGCCGAATCGGTCTGCATCCTGCTGTACCAGGCGCCCCTGTCG
CCGACGGCCAAACAGCGCTTGCAGACCATGCGCGAGACCACCGACGGCTTCGAGATCGCGCGGCGCGACCTGGATATCCG
CGGCCCCGGCGAATTCCTCGGCGCGCGGCAATCGGGCGAGGCCATGTTGCGCTTTGCCGACCTGAACCACGATGCGTGGA
TGGTCGAGTTCGCCCAGGGCGCGGCCGAGCAGATGCTGGCGCGCTTTCCCGACGCGGTGGAGGCGCACCTCAAGCGCTGG
CTCGGCGAGCGCGAGCACTACCTGCGCGTCTAG

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(47-194)

Helicase conserved C-terminal domain (Helicase_C)

(515-625)

DEAD/DEAH box helicase (DEAD)

(320-472)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(653-713)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

58.285

94.247

0.549
  recG/mmsA Streptococcus pneumoniae R6

41.203

91.096

0.375
  recG/mmsA Streptococcus pneumoniae R36A

41.203

91.096

0.375