Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   ACEPMZ_RS00975 Genome accession   NZ_CP168739
Coordinates   215169..215816 (+) Length   215 a.a.
NCBI ID   WP_405125057.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain RUN0320     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 210169..220816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPMZ_RS00945 (ACEPMZ_00945) - 210356..211009 (+) 654 WP_011000153.1 BON domain-containing protein -
  ACEPMZ_RS00950 (ACEPMZ_00950) - 211055..211585 (+) 531 WP_011000154.1 flavodoxin family protein -
  ACEPMZ_RS00955 (ACEPMZ_00955) - 211669..211995 (+) 327 WP_226951815.1 TraR/DksA family transcriptional regulator -
  ACEPMZ_RS00960 (ACEPMZ_00960) - 212028..212675 (+) 648 WP_011000156.1 BON domain-containing protein -
  ACEPMZ_RS00965 (ACEPMZ_00965) - 212731..213531 (-) 801 WP_020830925.1 helix-turn-helix domain-containing protein -
  ACEPMZ_RS00970 (ACEPMZ_00970) - 213790..215166 (+) 1377 WP_016722509.1 PAS domain-containing sensor histidine kinase -
  ACEPMZ_RS00975 (ACEPMZ_00975) letA 215169..215816 (+) 648 WP_405125057.1 response regulator Regulator
  ACEPMZ_RS00980 (ACEPMZ_00980) - 215920..216414 (-) 495 WP_011000160.1 hypothetical protein -
  ACEPMZ_RS00985 (ACEPMZ_00985) - 216654..217691 (+) 1038 WP_011000161.1 zinc-dependent alcohol dehydrogenase family protein -
  ACEPMZ_RS00990 (ACEPMZ_00990) - 217737..219554 (+) 1818 WP_038938154.1 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 23925.47 Da        Isoelectric Point: 6.2267

>NTDB_id=936932 ACEPMZ_RS00975 WP_405125057.1 215169..215816(+) (letA) [Ralstonia pseudosolanacearum strain RUN0320]
MIRVMIADDHAVMRDGVRHILERAGDFEVACEASDGTQVLQLVRDHQPQVIVLDLSMPGRSGLELLRQLHDDHPTVRVLV
LTMHAEEQYVARAFRAGASAYLTKESAATELVTALQKVARGGTYVSPPMAEKLAHSLGETSDEAAHMRLSDREMEVYRRL
VLGEPLTEIAASLCVSAKTISTYKMRLMDKLQLSSEAALVRYAIRHRLFSDDDTL

Nucleotide


Download         Length: 648 bp        

>NTDB_id=936932 ACEPMZ_RS00975 WP_405125057.1 215169..215816(+) (letA) [Ralstonia pseudosolanacearum strain RUN0320]
ATGATCCGCGTGATGATTGCCGACGATCACGCCGTGATGCGCGATGGCGTGCGCCATATTCTGGAGCGCGCCGGAGATTT
CGAGGTTGCGTGCGAAGCCTCTGACGGCACTCAGGTATTGCAACTGGTGCGTGACCACCAGCCACAGGTGATCGTGCTTG
ACCTGTCAATGCCGGGGCGCAGCGGGCTGGAACTGTTGCGTCAGTTACATGACGATCATCCGACGGTGCGCGTGTTGGTG
CTGACGATGCACGCAGAGGAGCAGTATGTGGCGCGCGCCTTCCGCGCAGGGGCGTCAGCCTACCTGACCAAGGAAAGTGC
CGCGACTGAATTGGTAACGGCGCTGCAGAAGGTGGCACGCGGTGGTACCTATGTCAGTCCACCCATGGCCGAGAAGCTTG
CGCACAGCCTGGGCGAGACCAGCGATGAGGCCGCGCACATGCGCCTGTCTGATCGCGAGATGGAGGTCTATCGCCGGCTA
GTGCTGGGTGAACCGCTCACGGAGATTGCCGCCAGCCTGTGTGTGAGCGCCAAGACCATTAGCACCTACAAGATGCGGTT
GATGGACAAGCTGCAGTTGTCTAGTGAGGCCGCACTCGTGCGCTACGCCATTCGTCATCGCTTGTTCTCTGACGACGACA
CCCTGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

39.048

97.674

0.381
  letA Legionella pneumophila strain ERS1305867

39.048

97.674

0.381