Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   V5F94_RS02320 Genome accession   NZ_CP145074
Coordinates   450934..451545 (+) Length   203 a.a.
NCBI ID   WP_353425736.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_I_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445934..456545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F94_RS02295 (V5F94_02305) - 446230..446811 (-) 582 WP_003698180.1 superoxide dismutase -
  V5F94_RS02300 (V5F94_02310) dnaB 446974..448380 (+) 1407 WP_010359914.1 replicative DNA helicase -
  V5F94_RS02305 (V5F94_02315) pilH 448688..449350 (+) 663 WP_047917842.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5F94_RS02310 (V5F94_02320) pilI 449382..449990 (+) 609 WP_235270336.1 type IV pilus modification protein PilV Machinery gene
  V5F94_RS02315 (V5F94_02325) pilJ 449987..450955 (+) 969 WP_235270335.1 PilW family protein Machinery gene
  V5F94_RS02320 (V5F94_02330) pilK 450934..451545 (+) 612 WP_353425736.1 pilus assembly protein Machinery gene
  V5F94_RS02325 (V5F94_02335) pilL 451547..452020 (+) 474 WP_025455870.1 PilX family type IV pilin Machinery gene
  V5F94_RS02330 (V5F94_02340) - 452090..452398 (-) 309 WP_010951048.1 AzlD family protein -
  V5F94_RS02335 (V5F94_02345) - 452395..453102 (-) 708 Protein_455 AzlC family ABC transporter permease -
  V5F94_RS02340 (V5F94_02350) dut 453268..453720 (+) 453 WP_047918679.1 dUTP diphosphatase -
  V5F94_RS02345 (V5F94_02355) dapC 453796..454983 (+) 1188 WP_047918680.1 succinyldiaminopimelate transaminase -
  V5F94_RS02350 (V5F94_02360) yaaA 455294..456073 (+) 780 WP_047918681.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22184.01 Da        Isoelectric Point: 5.3780

>NTDB_id=936891 V5F94_RS02320 WP_353425736.1 450934..451545(+) (pilK) [Neisseria gonorrhoeae strain WHO_I_2024]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEVFGNIVVQGTPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYEKGTGNVSKMP
RYIIEYLGEKNNQNIYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=936891 V5F94_RS02320 WP_353425736.1 450934..451545(+) (pilK) [Neisseria gonorrhoeae strain WHO_I_2024]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGTTTTTGGCAATATCGTGGTGCAAGGCACGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATGAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGTTATATTATCGAATATTTGGGCGAGAAGAATAACCAAAATATTTACAGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTGCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

99.015

100

0.99