Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   V5F94_RS02315 Genome accession   NZ_CP145074
Coordinates   449987..450955 (+) Length   322 a.a.
NCBI ID   WP_235270335.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_I_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 444987..455955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F94_RS02290 (V5F94_02300) - 445491..446000 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  V5F94_RS02295 (V5F94_02305) - 446230..446811 (-) 582 WP_003698180.1 superoxide dismutase -
  V5F94_RS02300 (V5F94_02310) dnaB 446974..448380 (+) 1407 WP_010359914.1 replicative DNA helicase -
  V5F94_RS02305 (V5F94_02315) pilH 448688..449350 (+) 663 WP_047917842.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5F94_RS02310 (V5F94_02320) pilI 449382..449990 (+) 609 WP_235270336.1 type IV pilus modification protein PilV Machinery gene
  V5F94_RS02315 (V5F94_02325) pilJ 449987..450955 (+) 969 WP_235270335.1 PilW family protein Machinery gene
  V5F94_RS02320 (V5F94_02330) pilK 450934..451545 (+) 612 WP_353425736.1 pilus assembly protein Machinery gene
  V5F94_RS02325 (V5F94_02335) pilL 451547..452020 (+) 474 WP_025455870.1 PilX family type IV pilin Machinery gene
  V5F94_RS02330 (V5F94_02340) - 452090..452398 (-) 309 WP_010951048.1 AzlD family protein -
  V5F94_RS02335 (V5F94_02345) - 452395..453102 (-) 708 Protein_455 AzlC family ABC transporter permease -
  V5F94_RS02340 (V5F94_02350) dut 453268..453720 (+) 453 WP_047918679.1 dUTP diphosphatase -
  V5F94_RS02345 (V5F94_02355) dapC 453796..454983 (+) 1188 WP_047918680.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35262.27 Da        Isoelectric Point: 9.1852

>NTDB_id=936890 V5F94_RS02315 WP_235270335.1 449987..450955(+) (pilJ) [Neisseria gonorrhoeae strain WHO_I_2024]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTKGDIVDSSNQTQSNLVKPGAKQENPLFSLKRSGMDKQLIPVAESADIKYPGFIQRLNALVFQYGIDDLDASA
ETVVVSSCSKIAKPGKKISTLQEAKSALQITNDDKQNGNITRQKHVVNAYAVGMIAGEEGLFRFQLDDKGKWGNPQLLAK
KIKRMDVQYIYVSGCPEDEDAGKEEQFKYTDRFDRSVTPAGVEVLLDSGLNAKIAASSDNSIYAYRINATIRGGNVCANR
TL

Nucleotide


Download         Length: 969 bp        

>NTDB_id=936890 V5F94_RS02315 WP_235270335.1 449987..450955(+) (pilJ) [Neisseria gonorrhoeae strain WHO_I_2024]
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCCGAGCATACTAAAGGCGATATTGTTGATTCAAGTAATCAAACTCAATCTAACCTTGTAAAACCCGG
TGCCAAACAAGAAAATCCCCTTTTTTCCTTAAAAAGGAGCGGCATGGATAAACAACTGATTCCCGTTGCTGAATCCGCAG
ATATTAAATATCCGGGTTTTATCCAGCGCCTTAACGCATTGGTTTTCCAATACGGTATCGATGATCTTGATGCGAGTGCT
GAGACTGTTGTAGTCAGCAGCTGTTCCAAAATAGCAAAACCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGC
ATTACAGATTACTAATGATGATAAACAAAATGGAAATATCACCCGTCAGAAACATGTGGTCAATGCCTATGCGGTCGGCA
TGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGCGAAA
AAGATTAAACGTATGGATGTGCAGTATATTTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATT
CAAATATACGGATAGATTCGACAGATCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGCCTTAATGCCAAGA
TTGCCGCTTCTTCAGACAATAGTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGA
ACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

78.462

100

0.792