Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5G04_RS09190 Genome accession   NZ_CP145067
Coordinates   1757928..1758314 (+) Length   128 a.a.
NCBI ID   WP_269472849.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_N_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1752928..1763314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G04_RS09170 (V5G04_09190) metG 1754233..1756287 (+) 2055 WP_047951312.1 methionine--tRNA ligase -
  V5G04_RS09175 (V5G04_09195) - 1756362..1756670 (-) 309 Protein_1784 NAD(P)-dependent oxidoreductase -
  V5G04_RS09180 (V5G04_09200) - 1756674..1757012 (+) 339 Protein_1785 pilin -
  V5G04_RS09185 (V5G04_09205) - 1757476..1757889 (+) 414 Protein_1786 pilin -
  V5G04_RS09190 (V5G04_09210) pilE 1757928..1758314 (+) 387 WP_269472849.1 pilin Machinery gene
  V5G04_RS09195 (V5G04_09215) - 1758371..1758760 (+) 390 Protein_1788 pilin -
  V5G04_RS09200 (V5G04_09220) pilE 1759112..1759498 (+) 387 WP_269472850.1 pilin Machinery gene
  V5G04_RS09205 (V5G04_09225) thiC 1759940..1761841 (-) 1902 WP_003686973.1 phosphomethylpyrimidine synthase ThiC -
  V5G04_RS09215 (V5G04_09235) - 1762439..1763314 (+) 876 WP_003686971.1 NUDIX hydrolase family protein -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14058.16 Da        Isoelectric Point: 10.9555

>NTDB_id=936819 V5G04_RS09190 WP_269472849.1 1757928..1758314(+) (pilE) [Neisseria gonorrhoeae strain WHO_N_2024]
MASSDKIKGKYVQSVTVAKGVVTAQMASTGVNKEIKDKRLSLWARRQDGSVKWFCGQPVKRADKANDTVADATGKDNGIN
TKHLPSTCRDKSSAGCTKHHLRLSIKIPKPSFPRTYIPSFPRKRESGT

Nucleotide


Download         Length: 387 bp        

>NTDB_id=936819 V5G04_RS09190 WP_269472849.1 1757928..1758314(+) (pilE) [Neisseria gonorrhoeae strain WHO_N_2024]
GTGGCATCCTCCGACAAAATCAAAGGCAAATATGTTCAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCCAAATGGC
TTCAACCGGCGTAAACAAAGAAATCAAAGACAAAAGACTCTCCCTGTGGGCCAGGCGTCAAGACGGTTCGGTAAAATGGT
TCTGCGGACAGCCGGTTAAGCGCGCCGACAAAGCCAACGACACCGTTGCCGACGCCACCGGCAAAGACAACGGCATCAAC
ACCAAGCACCTGCCGTCAACCTGCCGCGATAAATCATCTGCCGGTTGCACGAAACACCACCTACGGCTTTCTATAAAAAT
ACCTAAACCGTCATTCCCACGAACCTACATCCCGTCATTCCCACGAAAGCGGGAATCCGGAACGTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

76.596

73.438

0.563
  pilE Neisseria gonorrhoeae MS11

71.591

68.75

0.492