Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   ACEPM2_RS02125 Genome accession   NZ_CP168735
Coordinates   447604..450468 (-) Length   954 a.a.
NCBI ID   WP_011000381.1    Uniprot ID   Q8Y2B6
Organism   Ralstonia pseudosolanacearum strain RUN3223     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 442604..455468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPM2_RS02100 (ACEPM2_02100) - 444465..444869 (-) 405 WP_011000376.1 ribbon-helix-helix domain-containing protein -
  ACEPM2_RS02105 (ACEPM2_02105) - 444914..445492 (-) 579 WP_011000377.1 DJ-1/PfpI family protein -
  ACEPM2_RS02110 (ACEPM2_02110) - 445625..446218 (+) 594 WP_043876535.1 adenine phosphoribosyltransferase -
  ACEPM2_RS02115 (ACEPM2_02115) - 446318..446938 (+) 621 WP_011000379.1 LysE family translocator -
  ACEPM2_RS02120 (ACEPM2_02120) - 447039..447524 (-) 486 WP_011000380.1 adenosine-specific kinase -
  ACEPM2_RS02125 (ACEPM2_02125) uvrA 447604..450468 (-) 2865 WP_011000381.1 excinuclease ABC subunit UvrA Machinery gene
  ACEPM2_RS02130 (ACEPM2_02130) - 450691..451854 (+) 1164 WP_011000382.1 MFS transporter -
  ACEPM2_RS02135 (ACEPM2_02135) ssb 451902..452438 (+) 537 WP_011000383.1 single-stranded DNA-binding protein Machinery gene
  ACEPM2_RS02140 (ACEPM2_02140) - 452608..453182 (+) 575 Protein_425 transposase -
  ACEPM2_RS02145 (ACEPM2_02145) - 453598..453855 (-) 258 WP_011000385.1 hypothetical protein -
  ACEPM2_RS02150 (ACEPM2_02150) - 453885..454394 (-) 510 WP_011000386.1 hotdog family protein -
  ACEPM2_RS02155 (ACEPM2_02155) - 454391..455212 (-) 822 WP_011000387.1 beta-ketoacyl synthase chain length factor -

Sequence

Protein


Download         Length: 954 a.a.        Molecular weight: 105656.19 Da        Isoelectric Point: 6.9429

>NTDB_id=936818 ACEPM2_RS02125 WP_011000381.1 447604..450468(-) (uvrA) [Ralstonia pseudosolanacearum strain RUN3223]
MEAIKIRGARTHNLKNINLDLPRNQLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQLMEKPDVDLIEGLS
PAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARAGTPYCPEHGQPLEAQSVSQMVDAVLALPADTKLMILAPVVTNRKG
EHVDLFEAMQAQGFVRFRIRSGGGTAHEAEAKVYEVDALPKLKKNDKHAIEVVVDRVKVNPELKQRLAESFETALRLADG
RALALEMDTGKEHVFSSKFACPICSYSLPELEPRLFSFNNPMGACPHCDGLGQITFFDPKRVVAFPNLSLASGAIKGWDR
RNQFYFQMLQSLAAFYDFDTDTPFEELPSEVQDVVLQGSGKQQIPFTYINERGRTTVREHAFEGIIPNLERRYKETDSIA
VREELAKYQNNQACPECEGTRLRREARHVKLGDSDQARAIYEINGWPLRDALTYFLTLNLHGAKREIADKIVQEITSRLN
FLNNVGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLIGTLKHLRDLGNSVLVVEHDE
DMIRASDHVVDIGPGAGVHGGQIIAEGTPRQIERSPGSLTGEYLSGKRRIEVPKQRTAPDEARWLRIVNASGNNLKHVNA
DIPVGLLTCVTGVSGSGKSTLINDTLYNAVARHLYGSTPEPTAHDRIDGLEHFDKVINVDQSPIGRTPRSNPATYTGLFT
PIRELYAGVPAAKERGYDPGRFSFNVKGGRCEACQGDGVLKVEMHFLPDVYVPCDVCHGKRYNRETLEVLYKGKNITEVL
EMTVEQAHEFFAPVPVVRRKLQTLLDVGLGYIRLGQSATTLSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIE
LLLKVIHKLRDQGNTVVIIEHNLDVIKTADWLLDLGPEGGAGGGQIIAKGTPEEVAKSRASFTGKYLAPLLKRK

Nucleotide


Download         Length: 2865 bp        

>NTDB_id=936818 ACEPM2_RS02125 WP_011000381.1 447604..450468(-) (uvrA) [Ralstonia pseudosolanacearum strain RUN3223]
ATGGAAGCCATCAAGATTCGTGGGGCCCGGACCCACAACCTGAAGAACATCAACCTCGATCTGCCGCGCAATCAGCTGGT
GGTGATCACGGGGCTGTCGGGGTCGGGCAAGTCGTCGCTCGCGTTCGACACACTCTATGCGGAAGGGCAGCGCCGCTACG
TGGAGTCGCTGTCGGCCTATGCGCGGCAGTTCCTGCAACTGATGGAAAAGCCGGACGTCGACCTGATCGAAGGCCTGTCG
CCGGCCATCTCGATCGAACAGAAGGCCACCAGCCACAACCCGCGCTCCACCGTCGGCACCGTCACCGAGATCCACGACTA
CCTGCGCCTGCTGTACGCCCGCGCCGGCACGCCCTACTGCCCGGAGCACGGCCAGCCGCTGGAAGCGCAGAGCGTGTCGC
AGATGGTGGACGCCGTGCTGGCGCTGCCGGCCGACACCAAGCTGATGATCCTGGCGCCCGTGGTGACCAACCGCAAGGGC
GAGCACGTGGACCTGTTCGAGGCGATGCAGGCGCAGGGCTTCGTGCGCTTCCGCATCCGCTCGGGCGGCGGCACGGCGCA
CGAGGCCGAAGCCAAGGTCTACGAGGTCGACGCGCTGCCCAAGCTGAAGAAGAACGACAAGCACGCCATCGAGGTGGTGG
TCGATCGCGTCAAGGTCAACCCGGAACTCAAGCAGCGCCTGGCCGAATCCTTCGAGACCGCGCTGCGCCTGGCCGACGGC
CGCGCCCTCGCGCTGGAGATGGACACGGGCAAGGAGCACGTCTTCAGCTCCAAGTTCGCCTGCCCGATCTGCTCGTATTC
GCTGCCGGAGCTGGAGCCGCGCCTGTTCTCGTTCAACAACCCGATGGGCGCCTGCCCCCATTGCGACGGCCTGGGCCAGA
TCACCTTCTTCGACCCGAAGCGCGTGGTGGCCTTCCCCAACCTGTCGCTGGCCTCGGGCGCCATCAAGGGCTGGGACCGC
CGCAACCAGTTCTACTTCCAGATGCTGCAGAGCCTGGCGGCGTTCTACGACTTCGACACCGACACGCCGTTCGAAGAGCT
GCCCAGTGAAGTCCAGGACGTCGTGCTGCAGGGCTCGGGCAAGCAGCAGATCCCGTTCACGTACATCAACGAACGCGGCC
GCACCACGGTGCGCGAGCATGCCTTCGAGGGCATCATCCCCAACCTGGAGCGGCGCTACAAGGAAACCGACTCCATCGCC
GTGCGCGAAGAACTGGCCAAGTACCAGAACAACCAGGCCTGCCCCGAGTGCGAGGGCACGCGCCTGCGCCGCGAGGCGCG
CCACGTCAAGCTCGGCGACAGCGACCAGGCCCGCGCCATCTACGAGATCAACGGCTGGCCGCTGCGCGATGCGCTCACGT
ATTTCCTCACGCTGAACCTGCACGGCGCCAAGCGCGAGATCGCCGACAAGATCGTCCAGGAAATCACCTCGCGGCTGAAC
TTCCTGAACAACGTCGGGCTCGACTACCTCTCGCTGGAGCGCAGCGCCGACACGCTCTCCGGCGGCGAGGCGCAGCGCAT
CCGCCTGGCCTCGCAGATCGGCTCGGGCCTGACCGGCGTGATGTACGTGCTGGACGAGCCCTCCATCGGCCTGCACCAGC
GCGACAACGACCGGCTGATCGGCACCCTCAAGCACCTGCGCGACCTCGGCAACTCGGTGCTGGTGGTCGAGCACGATGAA
GACATGATCCGCGCCTCGGACCACGTGGTCGACATCGGCCCCGGCGCCGGCGTGCACGGCGGCCAGATCATCGCCGAAGG
CACGCCCAGGCAGATCGAGCGGTCACCCGGCTCGCTGACCGGCGAATACCTGTCGGGCAAGCGCCGCATCGAGGTGCCCA
AGCAGCGCACCGCGCCCGACGAAGCGCGCTGGCTGCGCATCGTCAACGCGTCGGGCAACAACCTGAAGCACGTCAACGCC
GACATCCCGGTCGGGCTGCTCACCTGCGTGACGGGCGTATCGGGCTCGGGCAAATCGACGCTGATCAACGACACGCTGTA
CAACGCGGTGGCACGCCACCTCTACGGCTCCACCCCGGAGCCCACCGCGCACGACCGCATCGACGGCCTGGAGCACTTCG
ACAAGGTCATCAACGTCGACCAGTCGCCGATCGGCCGCACCCCGCGCTCCAACCCGGCCACCTACACCGGCCTGTTCACG
CCGATCCGCGAGCTGTATGCGGGCGTGCCGGCCGCCAAGGAGCGCGGCTACGACCCGGGCCGCTTCTCGTTCAACGTCAA
GGGCGGCCGCTGCGAGGCATGCCAGGGCGACGGCGTGCTCAAGGTCGAGATGCACTTCCTGCCCGACGTGTACGTGCCCT
GCGACGTGTGCCACGGCAAGCGCTACAACCGCGAGACGCTGGAGGTGCTGTACAAGGGCAAGAACATCACCGAAGTGCTC
GAGATGACGGTCGAGCAGGCGCACGAGTTCTTCGCGCCGGTGCCGGTGGTGCGCCGCAAGCTGCAGACGCTGCTGGACGT
GGGCCTGGGCTACATCCGCCTGGGCCAGTCGGCGACCACGCTGTCGGGCGGCGAGGCACAGCGCGTGAAGCTGTCGCTGG
AGCTGTCCAAGCGCGACACCGGCCGCACGCTCTACATCCTCGACGAGCCGACCACCGGCCTGCACTTCCACGACATCGAG
CTGCTGCTCAAGGTGATCCACAAGCTGCGCGACCAGGGCAACACGGTCGTCATCATCGAGCACAACCTCGACGTGATCAA
AACGGCGGACTGGCTGCTCGACCTCGGCCCCGAAGGCGGCGCCGGCGGCGGGCAGATCATCGCCAAGGGCACGCCGGAGG
AGGTGGCCAAGAGCCGCGCGAGCTTTACCGGCAAGTATCTGGCGCCGCTGCTCAAGCGCAAATGA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(130-245)

UvrA DNA-binding domain (UvrA_DNA-bind)

(298-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y2B6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.917

99.266

0.565
  uvrA Streptococcus pneumoniae TIGR4

56.917

99.266

0.565
  uvrA Streptococcus pneumoniae D39

56.917

99.266

0.565