Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5G04_RS09055 Genome accession   NZ_CP145067
Coordinates   1732804..1733229 (+) Length   141 a.a.
NCBI ID   WP_134472171.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_N_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1727804..1738229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G04_RS09020 (V5G04_09035) - 1728253..1728645 (+) 393 Protein_1753 pilin -
  V5G04_RS09025 (V5G04_09040) - 1728706..1729011 (+) 306 Protein_1754 pilin -
  V5G04_RS09030 (V5G04_09045) - 1729030..1729359 (+) 330 Protein_1755 pilin -
  V5G04_RS09035 (V5G04_09050) - 1729491..1729892 (+) 402 WP_269472848.1 pilin -
  V5G04_RS09040 (V5G04_09055) - 1730027..1730410 (+) 384 Protein_1757 pilin -
  V5G04_RS09045 (V5G04_09060) - 1730875..1731273 (+) 399 Protein_1758 pilin -
  V5G04_RS09050 (V5G04_09070) lpxC 1731775..1732698 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  V5G04_RS09055 (V5G04_09075) pilE 1732804..1733229 (+) 426 WP_134472171.1 pilin Machinery gene
  V5G04_RS09060 (V5G04_09080) - 1733352..1733470 (+) 119 Protein_1761 pilin -
  V5G04_RS09065 (V5G04_09085) - 1734035..1734412 (+) 378 Protein_1762 pilin -
  V5G04_RS09070 (V5G04_09090) - 1734473..1734778 (+) 306 Protein_1763 pilin -
  V5G04_RS09075 (V5G04_09095) - 1734797..1735126 (+) 330 Protein_1764 pilin -
  V5G04_RS09080 (V5G04_09100) - 1735258..1735659 (+) 402 WP_269472848.1 pilin -
  V5G04_RS09085 (V5G04_09105) - 1735794..1736177 (+) 384 Protein_1766 pilin -
  V5G04_RS09090 (V5G04_09110) - 1736610..1737371 (+) 762 Protein_1767 opacity family porin -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15086.92 Da        Isoelectric Point: 9.1792

>NTDB_id=936817 V5G04_RS09055 WP_134472171.1 1732804..1733229(+) (pilE) [Neisseria gonorrhoeae strain WHO_N_2024]
MPTDPDSRLRGNDEAILLAEGQKSAVTGYCLNHGIWPANNTSAGVASASEIKGKYVQKVEVAKGVVTAQMASTGVNKEIK
NKKLSLWAKRQDGSVKWFCGQPVQRGAANDPKDAVTADTNGNEKINTKHLPSTCRDNFDAS

Nucleotide


Download         Length: 426 bp        

>NTDB_id=936817 V5G04_RS09055 WP_134472171.1 1732804..1733229(+) (pilE) [Neisseria gonorrhoeae strain WHO_N_2024]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGGGTATTGCCTGAATCACGGCATATGGCCCGCAAACAACACTTCTGCCGGCGTGGCATCCGCTTCAGAAATCAAAGGCA
AATATGTTCAGAAAGTTGAAGTCGCAAAAGGCGTCGTTACCGCCCAAATGGCTTCAACCGGCGTAAACAAAGAAATCAAA
AACAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTCAGCGCGGCGC
CGCCAACGACCCCAAAGACGCCGTTACCGCCGACACCAACGGCAACGAAAAAATCAACACCAAGCACCTGCCGTCAACCT
GCCGCGATAACTTTGATGCCAGCTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

72.535

100

0.73
  pilE Neisseria gonorrhoeae MS11

63.768

97.872

0.624