Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   V5G04_RS02705 Genome accession   NZ_CP145067
Coordinates   522889..523497 (+) Length   202 a.a.
NCBI ID   WP_047921003.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_N_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 517889..528497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G04_RS02680 (V5G04_02685) - 518214..518795 (-) 582 WP_047923823.1 superoxide dismutase -
  V5G04_RS02685 (V5G04_02690) dnaB 518959..520365 (+) 1407 WP_047951438.1 replicative DNA helicase -
  V5G04_RS02690 (V5G04_02695) pilH 520673..521338 (+) 666 WP_047921008.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5G04_RS02695 (V5G04_02700) pilI 521370..521978 (+) 609 WP_047920999.1 type IV pilus modification protein PilV Machinery gene
  V5G04_RS02700 (V5G04_02705) pilJ 521975..522910 (+) 936 WP_047921001.1 PilW family protein Machinery gene
  V5G04_RS02705 (V5G04_02710) pilK 522889..523497 (+) 609 WP_047921003.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5G04_RS02710 (V5G04_02715) pilL 523499..523972 (+) 474 WP_172616897.1 PilX family type IV pilin Machinery gene
  V5G04_RS02715 (V5G04_02720) - 524042..524350 (-) 309 WP_010951048.1 AzlD family protein -
  V5G04_RS02720 (V5G04_02725) - 524347..525056 (-) 710 Protein_526 AzlC family ABC transporter permease -
  V5G04_RS02725 (V5G04_02730) dut 525222..525674 (+) 453 WP_047951389.1 dUTP diphosphatase -
  V5G04_RS02730 (V5G04_02735) dapC 525746..526933 (+) 1188 WP_003690911.1 succinyldiaminopimelate transaminase -
  V5G04_RS02735 (V5G04_02740) yaaA 527244..528023 (+) 780 WP_003706583.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22012.90 Da        Isoelectric Point: 7.5809

>NTDB_id=936795 V5G04_RS02705 WP_047921003.1 522889..523497(+) (pilK) [Neisseria gonorrhoeae strain WHO_N_2024]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCENGLCTAVNVRTNGANEETFDNIVVKGKPTVEAVKRSCPAKSGKNSTDLCIDNQGVEYKKGTASVSKMPR
YIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=936795 V5G04_RS02705 WP_047921003.1 522889..523497(+) (pilK) [Neisseria gonorrhoeae strain WHO_N_2024]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACGTTTAGCGAAAACTGTGAAAACGGCCTGTGTACCGCAGTGAATGTACGGACAAATGGTGCTAATGA
AGAGACTTTTGACAATATCGTGGTGAAAGGCAAGCCTACCGTTGAGGCCGTGAAGCGTTCTTGCCCTGCAAAGTCTGGCA
AAAATTCTACCGACCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGGACGGCAAGCGTCAGCAAAATGCCGCGC
TATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAA
TACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-197)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

92.611

100

0.931