Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   V5G04_RS02690 Genome accession   NZ_CP145067
Coordinates   520673..521338 (+) Length   221 a.a.
NCBI ID   WP_047921008.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_N_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 515673..526338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G04_RS02665 (V5G04_02670) cysT 515797..516635 (-) 839 Protein_515 sulfate ABC transporter permease subunit CysT -
  V5G04_RS02670 (V5G04_02675) - 516816..517148 (+) 333 WP_003687908.1 hypothetical protein -
  V5G04_RS02675 (V5G04_02680) - 517475..517984 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  V5G04_RS02680 (V5G04_02685) - 518214..518795 (-) 582 WP_047923823.1 superoxide dismutase -
  V5G04_RS02685 (V5G04_02690) dnaB 518959..520365 (+) 1407 WP_047951438.1 replicative DNA helicase -
  V5G04_RS02690 (V5G04_02695) pilH 520673..521338 (+) 666 WP_047921008.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5G04_RS02695 (V5G04_02700) pilI 521370..521978 (+) 609 WP_047920999.1 type IV pilus modification protein PilV Machinery gene
  V5G04_RS02700 (V5G04_02705) pilJ 521975..522910 (+) 936 WP_047921001.1 PilW family protein Machinery gene
  V5G04_RS02705 (V5G04_02710) pilK 522889..523497 (+) 609 WP_047921003.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5G04_RS02710 (V5G04_02715) pilL 523499..523972 (+) 474 WP_172616897.1 PilX family type IV pilin Machinery gene
  V5G04_RS02715 (V5G04_02720) - 524042..524350 (-) 309 WP_010951048.1 AzlD family protein -
  V5G04_RS02720 (V5G04_02725) - 524347..525056 (-) 710 Protein_526 AzlC family ABC transporter permease -
  V5G04_RS02725 (V5G04_02730) dut 525222..525674 (+) 453 WP_047951389.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24628.98 Da        Isoelectric Point: 8.8946

>NTDB_id=936792 V5G04_RS02690 WP_047921008.1 520673..521338(+) (pilH) [Neisseria gonorrhoeae strain WHO_N_2024]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKDGASN
NRCDFSKKGWGMLAFGDKNGNKAYDGDVADVFLRSVVLNDDINDKRIDYAFNHIAFGSSQPTADRVVWTFNQNGTFGYTT
DQHLTERSSFFYSDGYIQIVLTDARAVSDADRKFRSAVVLIDSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=936792 V5G04_RS02690 WP_047921008.1 520673..521338(+) (pilH) [Neisseria gonorrhoeae strain WHO_N_2024]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TTTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGTCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGTGGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGCATATGACGGCGA
TGTGGCGGATGTTTTCCTCCGCAGCGTGGTATTGAATGATGATATCAATGATAAGCGGATTGATTATGCCTTCAACCATA
TCGCTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACGTTCAATCAAAACGGGACGTTCGGTTATACGACA
GACCAGCATCTTACAGAGCGATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAGGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACG
ATACGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

90.95

100

0.91