Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilJ   Type   Machinery gene
Locus tag   V5F91_RS02315 Genome accession   NZ_CP145064
Coordinates   450915..451859 (+) Length   314 a.a.
NCBI ID   WP_139596014.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_S_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 445915..456859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F91_RS02290 (V5F91_02295) - 446467..446976 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  V5F91_RS02295 (V5F91_02300) - 447208..447789 (-) 582 WP_003698180.1 superoxide dismutase -
  V5F91_RS02300 (V5F91_02305) dnaB 447953..449356 (+) 1404 WP_047917841.1 replicative DNA helicase -
  V5F91_RS02305 (V5F91_02310) pilH 449613..450278 (+) 666 WP_003692819.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5F91_RS02310 (V5F91_02315) pilV 450310..450918 (+) 609 WP_003692820.1 type IV pilus modification protein PilV Machinery gene
  V5F91_RS02315 (V5F91_02320) pilJ 450915..451859 (+) 945 WP_139596014.1 PilW family protein Machinery gene
  V5F91_RS02320 (V5F91_02325) pilK 451838..452449 (+) 612 WP_071197480.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5F91_RS02325 (V5F91_02330) pilL 452451..452924 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  V5F91_RS02330 (V5F91_02335) - 452994..453302 (-) 309 WP_010359926.1 AzlD family protein -
  V5F91_RS02335 (V5F91_02340) - 453299..454009 (-) 711 Protein_455 AzlC family ABC transporter permease -
  V5F91_RS02340 (V5F91_02345) dut 454175..454627 (+) 453 WP_003687923.1 dUTP diphosphatase -
  V5F91_RS02345 (V5F91_02350) dapC 454699..455886 (+) 1188 WP_071197481.1 succinyldiaminopimelate transaminase -
  V5F91_RS02350 (V5F91_02355) yaaA 456042..456821 (+) 780 WP_003692836.1 peroxide stress protein YaaA -

Sequence


Protein


Download         Length: 314 a.a.        Molecular weight: 34478.27 Da        Isoelectric Point: 9.1947

>NTDB_id=936746 V5F91_RS02315 WP_139596014.1 450915..451859(+) (pilJ) [Neisseria gonorrhoeae strain WHO_S_2024]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHIEQDVVSDVTQKNSPFSLKRNSTRNSTNKLIPIAESSNIGYQGFIQRLNALIFQYGIDDVNASAATTVVSSCG
AISKPSKQILTLEDAKKELKILNQDKEQNGNIARQRHVVNAYAVGKIAGEEGLFRFQLDDKGKWGNPQLLAKKVKRMDVR
YIYVSGCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGSDAKIAASSDNIIYAYRINATIRGGNVCANRTL

Nucleotide


Download         Length: 945 bp        

>NTDB_id=936746 V5F91_RS02315 WP_139596014.1 450915..451859(+) (pilJ) [Neisseria gonorrhoeae strain WHO_S_2024]
ATGAAACGTAAAATGCTAAACGTACCAAAAGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCCGAGCATATCGAACAGGATGTTGTTTCCGATGTGACGCAAAAAAACTCTCCTTTTTCCTTAAAAAG
GAACAGTACAAGGAACAGTACAAATAAACTTATCCCCATAGCGGAATCTTCAAATATCGGATATCAGGGTTTTATCCAGC
GCCTTAACGCATTGATTTTCCAATACGGAATCGATGATGTTAATGCAAGCGCCGCGACTACCGTCGTCAGCAGCTGTGGC
GCAATATCGAAACCGAGTAAGCAAATCCTTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTCTGAATCAGGATAAGGA
GCAAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAAGATTGCCGGTGAGGAAGGTTTGT
TCCGCTTCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGGTTAAACGTATGGATGTGCGG
TATATCTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATACGGATAAATTCGACAG
CTCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTAGTGATGCCAAGATTGCCGCTTCTTCAGATAATATTA
TTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

91.72

100

0.917