Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   V5F91_RS02305 Genome accession   NZ_CP145064
Coordinates   449613..450278 (+) Length   221 a.a.
NCBI ID   WP_003692819.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_S_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 444613..455278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F91_RS02280 (V5F91_02285) cysT 444798..445627 (-) 830 Protein_444 sulfate ABC transporter permease subunit CysT -
  V5F91_RS02285 (V5F91_02290) - 445808..446140 (+) 333 WP_047926879.1 hypothetical protein -
  V5F91_RS02290 (V5F91_02295) - 446467..446976 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  V5F91_RS02295 (V5F91_02300) - 447208..447789 (-) 582 WP_003698180.1 superoxide dismutase -
  V5F91_RS02300 (V5F91_02305) dnaB 447953..449356 (+) 1404 WP_047917841.1 replicative DNA helicase -
  V5F91_RS02305 (V5F91_02310) pilH 449613..450278 (+) 666 WP_003692819.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5F91_RS02310 (V5F91_02315) pilV 450310..450918 (+) 609 WP_003692820.1 type IV pilus modification protein PilV Machinery gene
  V5F91_RS02315 (V5F91_02320) pilJ 450915..451859 (+) 945 WP_139596014.1 PilW family protein Machinery gene
  V5F91_RS02320 (V5F91_02325) pilK 451838..452449 (+) 612 WP_071197480.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5F91_RS02325 (V5F91_02330) pilL 452451..452924 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  V5F91_RS02330 (V5F91_02335) - 452994..453302 (-) 309 WP_010359926.1 AzlD family protein -
  V5F91_RS02335 (V5F91_02340) - 453299..454009 (-) 711 Protein_455 AzlC family ABC transporter permease -
  V5F91_RS02340 (V5F91_02345) dut 454175..454627 (+) 453 WP_003687923.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24573.13 Da        Isoelectric Point: 9.3895

>NTDB_id=936744 V5F91_RS02305 WP_003692819.1 449613..450278(+) (pilH) [Neisseria gonorrhoeae strain WHO_S_2024]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPTQVKKDGTGN
NRCDLGKKEQGMLAFGDKNGNKVYDGDAADVFLRSVVLNDDIKDKRIDYTFNHIAFGQTRPTADRVVWTFNQNGTFGYLS
DQNLKNDSKFVYSDGYIQIVLTDAKAVSVDEKKFRSAVVLINSSGRVEVCPKNDTRAVCKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=936744 V5F91_RS02305 WP_003692819.1 449613..450278(+) (pilH) [Neisseria gonorrhoeae strain WHO_S_2024]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTACCCAAGTTAAAAAAGACGGTACGGGCAAC
AACCGATGCGACCTCGGTAAGAAGGAACAGGGGATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGTATATGACGGCGA
TGCTGCGGATGTTTTTCTCCGCAGCGTGGTATTGAATGATGATATCAAGGATAAGCGGATTGATTACACTTTCAATCATA
TCGCTTTCGGTCAAACACGGCCGACTGCCGATCGTGTTGTTTGGACTTTTAACCAAAACGGGACATTCGGCTATTTGTCC
GATCAGAATCTCAAGAATGATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGTTGACAGATGCGAAGGCGGT
TTCTGTCGATGAAAAAAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTTGAAGTTTGTCCTAAAAACG
ATACGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

87.33

100

0.873