Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   ACEPM0_RS08315 Genome accession   NZ_CP168731
Coordinates   1705121..1706395 (+) Length   424 a.a.
NCBI ID   WP_011001652.1    Uniprot ID   Q8XYP6
Organism   Ralstonia pseudosolanacearum strain RUN6285     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1700121..1711395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPM0_RS08295 (ACEPM0_08295) - 1700429..1700623 (+) 195 WP_011001649.1 hypothetical protein -
  ACEPM0_RS08300 (ACEPM0_08300) mnmC 1700695..1702668 (+) 1974 WP_197346207.1 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC -
  ACEPM0_RS08305 (ACEPM0_08305) tig 1702923..1704272 (+) 1350 WP_011001651.1 trigger factor -
  ACEPM0_RS08310 (ACEPM0_08310) clpP 1704302..1704955 (+) 654 WP_003267806.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  ACEPM0_RS08315 (ACEPM0_08315) clpX 1705121..1706395 (+) 1275 WP_011001652.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ACEPM0_RS08320 (ACEPM0_08320) lon 1706566..1708986 (+) 2421 WP_011001653.1 endopeptidase La -
  ACEPM0_RS08325 (ACEPM0_08325) - 1709160..1709432 (+) 273 WP_003267811.1 HU family DNA-binding protein -
  ACEPM0_RS08340 (ACEPM0_08340) - 1709706..1709831 (-) 126 WP_255322135.1 hypothetical protein -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 46403.57 Da        Isoelectric Point: 5.7601

>NTDB_id=936710 ACEPM0_RS08315 WP_011001652.1 1705121..1706395(+) (clpX) [Ralstonia pseudosolanacearum strain RUN6285]
MADKKGSTGEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNEIIRDEAAISEKEGGLAVKSDLPTPHEIRQSLDQY
VIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGED
VENIIQKLLQNCNYEVDKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQ
VDTTNILFICGGAFDGLEKIITQRSDKSGIGFGAEVKSKEERDVNEVLPQVEPEDLIKFGLIPELIGRLPVVATLAKLDE
AALMEILVEPKNAIVKQYQKLLAMEGVELEIRPSALTAIARKAIKRKTGARGLRSIVEHALMDVMYDLPNHKGVQKVVID
ESTIAGDGKPLLMYEEQPKVAGSN

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=936710 ACEPM0_RS08315 WP_011001652.1 1705121..1706395(+) (clpX) [Ralstonia pseudosolanacearum strain RUN6285]
ATGGCGGACAAGAAAGGCTCGACTGGCGAAAAGCTGCTGTACTGCTCGTTCTGCGGCAAGAGCCAGCATGAAGTCAAGAA
ACTGATTGCCGGCCCCTCGGTCTTCATCTGCGATGAATGTATCGACCTGTGCAATGAAATCATCCGGGACGAGGCCGCGA
TCTCCGAGAAGGAGGGCGGGCTGGCGGTCAAATCCGACCTGCCGACCCCGCACGAGATTCGCCAGAGCCTGGATCAATAC
GTGATCGGCCAGGAGCAGGCCAAGAAGATCCTGGCGGTTGCGGTCTATAACCATTACAAGCGCTTGAAGCATCTCGGCAA
GAAGGATGATGTCGAGCTGTCCAAGAGCAACATCCTGCTCATCGGGCCGACCGGCTCGGGCAAGACGCTGCTGGCGCAGA
CGCTGGCTCGCTTGCTGAACGTGCCGTTCGTCATCGCCGACGCCACCACGCTGACCGAAGCCGGCTACGTGGGCGAGGAC
GTCGAGAACATCATCCAGAAGCTGCTGCAGAACTGCAATTACGAGGTCGACAAGGCACAGCGTGGCATTGTCTACATCGA
TGAGATCGACAAGATTTCGCGCAAGTCCGACAACCCGTCCATCACCCGCGACGTTTCCGGGGAGGGTGTGCAGCAGGCCC
TGCTGAAGCTGATTGAAGGGACGATGGCCTCGGTGCCGCCGCAGGGCGGGCGCAAGCACCCAAACCAGGATTTCCTCCAG
GTCGACACTACCAATATCCTGTTTATCTGCGGCGGTGCGTTCGATGGTCTCGAGAAGATCATCACGCAGCGCTCGGACAA
GTCCGGCATCGGCTTCGGCGCCGAGGTCAAGAGCAAGGAAGAGCGGGACGTCAACGAAGTGCTGCCGCAGGTGGAGCCGG
AAGACCTGATCAAGTTCGGCCTGATTCCCGAACTGATCGGCCGCCTGCCCGTGGTGGCGACGCTGGCCAAGCTGGACGAG
GCCGCGCTGATGGAGATCCTGGTCGAGCCGAAGAATGCAATCGTCAAGCAGTATCAAAAACTGCTGGCCATGGAAGGGGT
GGAGCTGGAAATCCGTCCGAGCGCGCTGACGGCGATTGCCCGCAAGGCGATCAAGCGCAAGACGGGGGCGCGCGGATTGC
GCTCCATCGTCGAGCACGCGCTGATGGATGTGATGTACGACCTTCCCAACCACAAGGGTGTGCAGAAGGTGGTGATCGAC
GAGAGCACGATCGCCGGCGACGGCAAGCCCTTGCTGATGTACGAAGAGCAACCCAAGGTTGCAGGTTCCAACTGA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(318-393)

ClpX C4-type zinc finger (zf-C4_ClpX)

(13-49)

AAA domain (Cdc48 subfamily) (AAA_2)

(115-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8XYP6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

60.688

95.991

0.583
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.342

95.047

0.517