Detailed information NTG0936702

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: ACEPM0_RS04215
• Genome accession: NZ_CP168731
• Coordinates: 864693..866981 (+)
• Length: 762 a.a.
• NCBI ID: WP_011002381.1
• Uniprot ID: Q8XWL0
• Organism: Ralstonia pseudosolanacearum strain RUN6285
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 859693..871981

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACEPM0_RS04190 (ACEPM0_04190)	icd	860465..861715 (+)	1251	WP_016725925.1	NADP-dependent isocitrate dehydrogenase	-
ACEPM0_RS04195 (ACEPM0_04195)	-	861942..862154 (+)	213	WP_016724132.1	hypothetical protein	-
ACEPM0_RS04200 (ACEPM0_04200)	-	862343..862963 (-)	621	WP_011002384.1	DUF4126 domain-containing protein	-
ACEPM0_RS04205 (ACEPM0_04205)	-	863613..863816 (-)	204	WP_011002383.1	cold-shock protein	-
ACEPM0_RS04210 (ACEPM0_04210)	clpS	864370..864696 (+)	327	WP_011002382.1	ATP-dependent Clp protease adapter ClpS	-
ACEPM0_RS04215 (ACEPM0_04215)	clpC	864693..866981 (+)	2289	WP_011002381.1	ATP-dependent Clp protease ATP-binding subunit ClpA	Regulator
ACEPM0_RS04220 (ACEPM0_04220)	dut	867051..867497 (-)	447	WP_011002380.1	dUTP diphosphatase	-
ACEPM0_RS04225 (ACEPM0_04225)	-	867494..868546 (-)	1053	WP_197343412.1	LLM class flavin-dependent oxidoreductase	-
ACEPM0_RS04230 (ACEPM0_04230)	coaBC	868543..869748 (-)	1206	WP_011002378.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
ACEPM0_RS04235 (ACEPM0_04235)	-	869897..870472 (+)	576	WP_028853530.1	YdcF family protein	-
ACEPM0_RS04240 (ACEPM0_04240)	lspA	870512..871033 (-)	522	WP_011002376.1	signal peptidase II	-

Sequence

Protein

• Length: 762 a.a.
• Molecular weight: 83548.71 Da
• Isoelectric Point: 6.2902

>NTDB_id=936702 ACEPM0_RS04215 WP_011002381.1 864693..866981(+) (clpC) [Ralstonia pseudosolanacearum strain RUN6285]
MIAQELEVSLHMAFVEARQARHEFITVEHLLLALLDNPTAAEVLRACAANIEDLRTHLKNFIADNTPVVPGTDEVDTQPT
LGFQRVIQRAIMHVQSTSNGKKEVTGANVLVAIFGEKDSHAVYYLQQQGVTRLDVVNFISHGIRKDQAEPAKHGDSNPEG
EAGDGKESPLEQFTQNLNALAKAGKIDPLIGREQEVERVVQVLCRRRKNNPLLVGEAGVGKTAIAEGLAWRITKGEVPDI
LARSVVYSLDMGALLAGTKYRGDFEQRLKGVLKSLKDNPNAILFIDEIHTLIGAGAASGGTLDASNLLKPALSSGALKCI
GATTFTEYRGIFEKDAALSRRFQKIDVVEPSIDQTVQILRGLKSRFEEHHGVKYAASALTAAAELSARFITDRHLPDKAI
DVIDEAGAAQRILPKSKQKKTIGKGEIEDIVSRIARVPPQSVSQDDRSKLQTLERDLKSVVFGQDPAIDALASAIKMSRA
GLGKTDKPIGSFLFSGPTGVGKTEVAKQLAFILGIELIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAITKKPHC
VLLLDEIEKAHPDIFNILLQVMDHGSLTDNNGRKADFRNVIIVMTTNAGAETMNKATIGFTTTREQGDEMADIKRMFTPE
FRNRLDATISFRSLDEDIILRVVDKFLMQLEEQLHEKKVDAVFTEKLRRFLAKKGFDPLMGARPMQRLIQDMIRKALADE
LLFGKLVNGGKVAVDLDDADAVKLEFSENEAPPAPAQEEAEA

Nucleotide

• Length: 2289 bp

>NTDB_id=936702 ACEPM0_RS04215 WP_011002381.1 864693..866981(+) (clpC) [Ralstonia pseudosolanacearum strain RUN6285]
ATGATCGCGCAAGAACTGGAAGTCAGCCTGCACATGGCGTTTGTCGAAGCCCGCCAGGCTCGCCACGAATTCATTACGGT
GGAGCATCTGCTGCTTGCGCTGCTGGACAATCCGACGGCGGCGGAAGTGCTGCGCGCCTGCGCCGCCAACATCGAAGACC
TCCGCACGCACCTGAAGAACTTCATCGCCGACAACACGCCGGTGGTGCCGGGCACGGACGAGGTGGACACGCAGCCGACG
CTGGGCTTCCAGCGCGTGATCCAGCGCGCCATCATGCACGTGCAGTCGACCTCCAACGGCAAGAAGGAGGTGACGGGCGC
CAATGTGCTGGTGGCCATCTTCGGCGAGAAGGACTCCCACGCGGTCTACTACCTGCAGCAGCAGGGCGTGACGCGGCTGG
ACGTCGTCAACTTCATCAGCCACGGCATCCGCAAGGACCAAGCCGAGCCGGCCAAGCACGGCGACAGCAACCCGGAGGGC
GAAGCCGGCGACGGCAAGGAAAGCCCGCTGGAGCAGTTCACCCAGAACCTGAACGCGCTGGCCAAGGCCGGCAAGATCGA
TCCGCTGATCGGCCGCGAGCAGGAAGTCGAGCGCGTGGTGCAGGTGCTGTGCCGTCGCCGCAAGAACAATCCGCTGCTGG
TGGGCGAGGCGGGCGTCGGCAAGACGGCGATCGCCGAAGGGCTGGCATGGCGCATCACCAAGGGCGAGGTGCCGGACATC
CTGGCCCGGTCCGTGGTGTATTCGCTCGACATGGGCGCGCTGCTGGCCGGCACCAAGTATCGTGGCGACTTCGAGCAGCG
GCTCAAGGGCGTGCTGAAGTCGCTCAAGGACAACCCGAACGCGATCCTGTTCATCGACGAAATCCATACGCTGATCGGCG
CCGGCGCCGCATCGGGCGGCACGCTGGACGCGAGCAACCTGCTCAAGCCGGCGCTGTCGTCGGGCGCGCTCAAGTGCATC
GGCGCGACCACCTTCACCGAATACCGGGGCATCTTCGAGAAGGACGCGGCGCTGTCGCGGCGCTTCCAGAAGATCGACGT
GGTGGAGCCGTCCATTGACCAGACCGTGCAGATCCTGCGTGGGCTGAAGTCGCGGTTCGAGGAGCACCACGGCGTCAAGT
ACGCGGCGTCCGCCCTGACGGCGGCGGCTGAGCTGTCGGCGCGTTTCATTACTGACCGCCACCTGCCGGACAAGGCGATC
GACGTGATCGACGAGGCCGGCGCGGCGCAGCGCATCCTGCCGAAGTCGAAGCAGAAGAAGACCATCGGCAAGGGCGAGAT
TGAAGACATCGTGTCGCGCATCGCCCGTGTCCCGCCGCAAAGCGTGTCGCAGGACGACCGCAGCAAGCTGCAGACGCTGG
AGCGCGATCTGAAGTCGGTCGTGTTCGGGCAGGACCCGGCCATCGACGCGCTGGCTTCGGCCATCAAGATGTCGCGTGCC
GGGCTGGGCAAGACCGACAAGCCGATCGGCTCGTTCCTGTTCTCCGGCCCGACCGGCGTCGGCAAGACCGAGGTCGCCAA
GCAGCTGGCGTTCATCCTGGGCATCGAGCTGATCCGCTTCGACATGTCGGAGTACATGGAACGCCATGCGGTGAGCCGGC
TGATCGGCGCGCCTCCGGGCTACGTCGGGTTCGACCAGGGCGGCCTGCTGACCGAGGCCATCACCAAGAAGCCGCACTGC
GTGCTGCTGCTGGACGAAATCGAGAAGGCCCACCCGGACATCTTCAACATCCTGCTGCAGGTGATGGACCACGGCTCGCT
GACGGACAACAACGGCCGCAAGGCGGATTTCCGCAACGTGATCATCGTCATGACGACCAACGCGGGCGCCGAGACGATGA
ACAAGGCCACCATCGGCTTCACCACGACGCGCGAGCAGGGCGACGAGATGGCCGATATCAAGCGGATGTTCACGCCGGAG
TTCCGCAACCGCCTGGATGCGACCATCAGCTTCCGCTCGCTGGACGAGGACATCATCCTGCGCGTGGTCGACAAGTTCCT
GATGCAGCTGGAAGAGCAGCTGCACGAGAAGAAGGTGGACGCCGTCTTCACCGAGAAGCTGCGCCGCTTCCTGGCGAAGA
AGGGCTTCGACCCGCTGATGGGCGCGCGGCCGATGCAGCGCCTGATCCAGGACATGATCCGCAAGGCGCTGGCCGACGAG
CTGCTGTTCGGCAAGCTGGTCAACGGCGGCAAGGTGGCGGTGGACCTGGACGATGCCGACGCGGTCAAGCTGGAGTTCTC
CGAGAACGAGGCGCCGCCCGCGCCCGCGCAGGAAGAGGCGGAAGCCTGA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (212-324)

• AAA domain (Cdc48 subfamily) (AAA_2) (487-647)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (654-734)

• AAA lid domain (AAA_lid_9) (351-454)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (13-62)

3D structure

• AlphaFold DB: Q8XWL0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	40.718	100	0.432
clpC	Streptococcus thermophilus LMG 18311	38.095	100	0.409
clpA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	42.582	95.538	0.407
clpC	Streptococcus thermophilus LMD-9	43.614	84.252	0.367