Detailed information NTG0936653

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACEPMY_RS10460
• Genome accession: NZ_CP168729
• Coordinates: 2236590..2237723 (-)
• Length: 377 a.a.
• NCBI ID: WP_011001157.1
• Uniprot ID: Q8Y037
• Organism: Ralstonia pseudosolanacearum strain RUN6340
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2231590..2242723

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACEPMY_RS10440 (ACEPMY_10440)	ndk	2232601..2233026 (-)	426	WP_011001161.1	nucleoside-diphosphate kinase	-
ACEPMY_RS10445 (ACEPMY_10445)	-	2233395..2234096 (+)	702	WP_011001160.1	Bax inhibitor-1/YccA family protein	-
ACEPMY_RS10450 (ACEPMY_10450)	rlmD	2234180..2235532 (-)	1353	WP_020831713.1	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	-
ACEPMY_RS10455 (ACEPMY_10455)	-	2235687..2236556 (+)	870	WP_071089381.1	endonuclease/exonuclease/phosphatase family protein	-
ACEPMY_RS10460 (ACEPMY_10460)	rpoS	2236590..2237723 (-)	1134	WP_011001157.1	RNA polymerase sigma factor RpoS	Regulator
ACEPMY_RS10465 (ACEPMY_10465)	-	2237732..2238559 (-)	828	WP_016725833.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACEPMY_RS10470 (ACEPMY_10470)	-	2238561..2239526 (-)	966	WP_071089383.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACEPMY_RS10475 (ACEPMY_10475)	surE	2239542..2240297 (-)	756	WP_011001154.1	5'/3'-nucleotidase SurE	-
ACEPMY_RS10480 (ACEPMY_10480)	-	2240489..2241463 (+)	975	WP_197346375.1	NADPH:quinone oxidoreductase family protein	-
ACEPMY_RS10485 (ACEPMY_10485)	-	2241581..2242606 (+)	1026	WP_197346398.1	IS110 family transposase	-

Sequence

Protein

• Length: 377 a.a.
• Molecular weight: 41830.76 Da
• Isoelectric Point: 4.6833

>NTDB_id=936653 ACEPMY_RS10460 WP_011001157.1 2236590..2237723(-) (rpoS) [Ralstonia pseudosolanacearum strain RUN6340]
MPRQKAATSANPADETIGAVDGPNAPNGRSGRRARGAAPAASDDVEVVDPLIDEAPAAEPADIADTSDANDSADESDEED
EDGEEAAPEEDFRTVLQAELAADTVQHYLNRISIKPLLTPAEELHFSTLAKAGEFAARQVMIERNLRLVVSIAKGYLNRG
VPLLDLIEEGNLGLMHAIEKFDPERGFRFSTYATWWIRQSIERAIMNQARTVRLPVHVIRELNQVLRAKRHLEKSGIDGR
DASIEDIAHLLGKTTEEVQDVLSLNEHTTSLDTPFDLDPGTSLLDFLSDEHGASPDQEVAHRELSQLMKSWLARLSDKHR
YVVERRFGLNHIEPATLEELAAEMGLTRERVRQIQQEALVKLKRHFASQGVRKDAVL

Nucleotide

• Length: 1134 bp

>NTDB_id=936653 ACEPMY_RS10460 WP_011001157.1 2236590..2237723(-) (rpoS) [Ralstonia pseudosolanacearum strain RUN6340]
ATGCCGCGCCAGAAAGCCGCCACGTCCGCCAACCCCGCCGATGAGACCATCGGCGCCGTCGATGGCCCGAACGCCCCGAA
CGGGCGTAGCGGGCGGCGTGCGCGCGGCGCAGCGCCGGCAGCCTCCGATGACGTCGAAGTCGTCGATCCCCTGATCGATG
AGGCGCCTGCCGCCGAGCCCGCCGACATCGCCGATACCTCGGACGCCAACGACAGCGCCGACGAATCCGACGAAGAGGAC
GAGGACGGCGAGGAAGCCGCGCCTGAGGAAGACTTCCGCACGGTGTTGCAGGCCGAGCTGGCCGCTGACACCGTCCAGCA
TTACCTGAACCGCATCAGCATCAAGCCGCTGCTGACGCCGGCGGAGGAACTGCACTTCTCCACGCTGGCCAAGGCAGGCG
AGTTCGCCGCGCGGCAGGTGATGATCGAGCGCAATCTGCGCCTGGTGGTCAGTATCGCCAAGGGCTATCTGAACCGCGGC
GTGCCGCTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATGCACGCGATCGAGAAATTCGATCCGGAGCGCGGCTT
CCGTTTCTCCACGTATGCCACGTGGTGGATCCGCCAGAGCATCGAGCGGGCCATCATGAACCAGGCGCGCACCGTCCGCC
TGCCGGTGCACGTGATCCGCGAGCTCAACCAGGTGCTGCGCGCCAAGCGCCATCTGGAAAAGAGCGGCATCGATGGCCGC
GACGCCAGCATCGAAGACATTGCGCACCTGCTCGGCAAGACCACCGAGGAGGTGCAGGACGTGCTTTCGCTCAACGAGCA
CACGACCTCGCTCGATACGCCGTTCGACCTGGATCCGGGCACCAGCCTGCTCGATTTCCTGTCGGACGAGCATGGCGCCT
CGCCAGACCAGGAAGTCGCGCACCGCGAGTTGTCGCAGCTGATGAAATCCTGGCTGGCACGGCTGTCCGACAAGCACCGC
TACGTGGTGGAACGCCGGTTCGGCCTTAACCACATCGAGCCGGCCACCCTCGAAGAGCTGGCCGCCGAGATGGGCCTGAC
GCGCGAGCGTGTGCGTCAGATCCAGCAGGAAGCGCTGGTCAAGCTCAAGCGGCACTTCGCCTCGCAAGGCGTGCGCAAGG
ATGCGGTGCTGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (221-298)

• Sigma-70, region 4 (Sigma70_r4) (311-363)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (103-136)

• Sigma-70 region 2 (Sigma70_r2) (141-210)

3D structure

• AlphaFold DB: Q8Y037

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	50.903	73.475	0.374