Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACEPMY_RS03250 Genome accession   NZ_CP168729
Coordinates   674386..676578 (+) Length   730 a.a.
NCBI ID   WP_197355143.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain RUN6340     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 669386..681578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPMY_RS03230 (ACEPMY_03230) secD 669633..671513 (-) 1881 WP_011002622.1 protein translocase subunit SecD -
  ACEPMY_RS03235 (ACEPMY_03235) yajC 671635..671964 (-) 330 WP_011002621.1 preprotein translocase subunit YajC -
  ACEPMY_RS03240 (ACEPMY_03240) tgt 672076..673227 (-) 1152 WP_016723717.1 tRNA guanosine(34) transglycosylase Tgt -
  ACEPMY_RS03245 (ACEPMY_03245) queA 673221..674309 (-) 1089 WP_071623711.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  ACEPMY_RS03250 (ACEPMY_03250) recG 674386..676578 (+) 2193 WP_197355143.1 ATP-dependent DNA helicase RecG Machinery gene
  ACEPMY_RS03255 (ACEPMY_03255) - 676597..676800 (-) 204 WP_058908292.1 GDCCVxC domain-containing (seleno)protein -
  ACEPMY_RS03260 (ACEPMY_03260) - 676812..677252 (-) 441 WP_011002617.1 hypothetical protein -
  ACEPMY_RS03265 (ACEPMY_03265) - 677476..677649 (-) 174 WP_162903483.1 hypothetical protein -
  ACEPMY_RS03270 (ACEPMY_03270) - 677794..678924 (-) 1131 WP_197346275.1 DSD1 family PLP-dependent enzyme -
  ACEPMY_RS03275 (ACEPMY_03275) - 679066..680007 (+) 942 WP_165591725.1 LysR family transcriptional regulator -
  ACEPMY_RS03280 (ACEPMY_03280) - 680198..681421 (-) 1224 WP_197343955.1 diaminopropionate ammonia-lyase -

Sequence

Protein


Download         Length: 730 a.a.        Molecular weight: 79217.33 Da        Isoelectric Point: 9.5031

>NTDB_id=936633 ACEPMY_RS03250 WP_197355143.1 674386..676578(+) (recG) [Ralstonia pseudosolanacearum strain RUN6340]
MPARARSATAAVPAPDADTAPAAGPRRAPAAKPADKPAAKTARPADKLAKLGLRRDVDLVLHLPMRYEDETALLTIAEAV
ARANTGWAAQVDGVVTRNEVAFRPRRQLVVHIADDSGELVLRFLNFYGSQVKQMAEGARLRVRGEVRGGFFGAEMVHPAV
RAVTPDEPLPDRLTPVYPSTAGVAQAYLRKAILNALGRTPLPETLPDSLLRGPLAPLKLMAPAEAVRLLHQPTPDVDEHS
LVERTHPAWLRIKFDELLAQQLSLKRAQAARRTRSAPVLRAGGADGLLARFLAALPFKLTGAQARVWEEIRADLARPYPM
QRLLQGDVGSGKTVIAALAACQAIDAGRQAALMAPTELLAEQHYRKLSAWLAPLGVDIVWLAGSLKRKQKDEAAARVAAG
TAQLVIGTHALIQDTVTFARLGLAVVDEQHRFGVAQRLALRGKAGGTDTPVAETAQLVPHQLMMSATPIPRTLAMTYYAD
LDVSAIDELPPGRTPVVTRLVNDARRDEVIERIHAAAREGRQVYWVCLLIEESEALQLQTAVETFETLSQSLAGLKVGLV
HGRLPSADKAAVMSAFAGGELHVLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCILLYQAPLS
PTAKQRLQTMRETTDGFEIARRDLDIRGPGEFLGARQSGEAMLRFADLNHDAWMVEFAQGAAEQMLARFPDAVEAHLKRW
LGEREHYLRV

Nucleotide


Download         Length: 2193 bp        

>NTDB_id=936633 ACEPMY_RS03250 WP_197355143.1 674386..676578(+) (recG) [Ralstonia pseudosolanacearum strain RUN6340]
GTGCCCGCTCGCGCCCGCTCCGCCACCGCCGCCGTTCCCGCGCCCGATGCCGACACGGCGCCGGCCGCCGGCCCCAGGCG
CGCGCCCGCGGCGAAGCCCGCGGACAAGCCGGCCGCCAAGACCGCCCGCCCCGCCGACAAGCTGGCCAAGCTCGGCCTGC
GCCGCGACGTCGATCTCGTGCTGCACCTGCCGATGCGCTATGAGGACGAAACCGCGCTGCTGACCATCGCCGAGGCCGTC
GCCCGCGCCAATACCGGCTGGGCCGCGCAGGTGGATGGGGTGGTGACGCGCAACGAAGTGGCGTTCCGGCCCCGCCGGCA
ACTGGTGGTGCACATCGCTGACGATTCCGGCGAGCTGGTGCTGCGCTTTCTCAACTTCTACGGCAGCCAGGTCAAGCAGA
TGGCCGAGGGTGCGCGCCTGCGCGTGCGCGGCGAGGTGCGCGGCGGCTTCTTCGGCGCGGAGATGGTGCATCCGGCGGTG
CGCGCCGTGACGCCGGACGAGCCGCTGCCCGACCGCCTGACCCCGGTCTATCCCAGCACCGCCGGCGTGGCGCAGGCGTA
TCTGCGCAAGGCCATCCTGAACGCGCTCGGCCGCACGCCGCTGCCCGAGACCCTGCCGGACAGCCTGTTGCGCGGGCCGC
TGGCGCCGCTCAAGCTGATGGCGCCCGCCGAGGCCGTCCGCCTGCTGCACCAGCCCACGCCCGACGTGGACGAGCACAGC
CTGGTCGAACGCACCCACCCGGCCTGGCTGCGCATCAAGTTCGACGAACTGCTGGCGCAGCAACTGTCGCTCAAGCGCGC
CCAGGCCGCGCGCCGCACGCGCAGCGCGCCGGTGCTGCGGGCCGGCGGCGCGGACGGGCTGCTCGCGCGCTTCCTGGCGG
CGCTGCCCTTCAAGCTGACCGGCGCGCAGGCCCGCGTGTGGGAGGAGATCCGCGCGGACCTCGCCCGGCCGTACCCGATG
CAGCGGCTGCTGCAGGGCGACGTGGGCAGCGGCAAGACCGTCATCGCCGCGCTGGCCGCGTGCCAGGCCATCGACGCCGG
CCGGCAGGCCGCGCTGATGGCGCCGACCGAACTGCTGGCCGAGCAGCACTACCGCAAGCTGTCGGCCTGGCTCGCGCCGC
TGGGCGTGGACATCGTCTGGCTGGCCGGCAGCCTCAAGCGCAAGCAGAAGGACGAGGCCGCTGCGCGCGTGGCCGCCGGC
ACCGCGCAGCTGGTGATCGGCACCCATGCGCTGATCCAGGACACCGTGACCTTCGCCCGCCTGGGGCTGGCCGTGGTGGA
CGAGCAGCACCGCTTCGGCGTGGCGCAGCGGCTGGCGCTGCGCGGCAAGGCCGGCGGCACCGACACGCCCGTCGCCGAGA
CCGCGCAGCTGGTGCCGCACCAGCTGATGATGTCGGCCACGCCGATCCCGCGCACGCTGGCGATGACGTACTACGCCGAC
CTCGACGTCTCGGCCATCGACGAGCTGCCGCCCGGCCGCACGCCGGTGGTCACGCGCCTGGTCAACGATGCGCGCCGCGA
CGAGGTGATCGAACGCATCCACGCCGCCGCGCGCGAGGGGCGGCAGGTCTACTGGGTCTGTCTCCTGATCGAAGAAAGCG
AGGCGCTGCAGCTGCAGACTGCCGTCGAGACGTTCGAGACGCTGTCGCAGAGCCTGGCCGGCCTCAAGGTCGGGCTGGTG
CACGGGCGCCTGCCGTCCGCCGACAAGGCCGCGGTGATGAGCGCCTTCGCCGGCGGCGAGCTGCACGTGCTGGTGGCGAC
CACCGTGATCGAAGTGGGCGTCGACGTGCCCAACGCCTCGCTGATGGTGATCGAGCACGCCGAGCGCTTCGGGCTGGCGC
AGCTCCATCAGCTGCGCGGACGGGTCGGGCGCGGCACGGCCGAATCGGTCTGCATCCTGCTGTACCAGGCGCCCCTGTCG
CCGACGGCCAAGCAGCGCCTGCAGACCATGCGCGAGACCACCGACGGCTTCGAGATCGCGCGGCGCGACTTGGATATCCG
CGGCCCCGGCGAATTCCTCGGCGCGCGGCAATCGGGCGAGGCCATGTTGCGCTTTGCCGACCTGAACCACGATGCGTGGA
TGGTCGAGTTCGCCCAGGGCGCGGCCGAGCAGATGCTGGCGCGCTTTCCCGACGCGGTGGAGGCGCACCTCAAGCGCTGG
CTCGGCGAGCGCGAGCACTACCTGCGCGTCTAG

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(47-194)

Helicase conserved C-terminal domain (Helicase_C)

(516-625)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(653-713)

DEAD/DEAH box helicase (DEAD)

(320-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

58.14

94.247

0.548
  recG/mmsA Streptococcus pneumoniae R6

41.053

91.096

0.374
  recG/mmsA Streptococcus pneumoniae R36A

41.053

91.096

0.374