Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5F97_RS09495 Genome accession   NZ_CP145057
Coordinates   1820674..1821162 (+) Length   162 a.a.
NCBI ID   WP_269472471.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_alpha_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1815674..1826162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F97_RS09475 (V5F97_09515) metG 1817105..1819159 (+) 2055 WP_047917751.1 methionine--tRNA ligase -
  V5F97_RS09480 (V5F97_09520) - 1819234..1819542 (-) 309 Protein_1845 NAD(P)-dependent oxidoreductase -
  V5F97_RS09485 (V5F97_09525) - 1819546..1819878 (+) 333 Protein_1846 pilin -
  V5F97_RS09490 (V5F97_09530) - 1819905..1820260 (+) 356 Protein_1847 pilin -
  V5F97_RS09495 (V5F97_09535) pilE 1820674..1821162 (+) 489 WP_269472471.1 pilin Machinery gene
  V5F97_RS09500 (V5F97_09540) pilE 1821201..1821671 (+) 471 WP_003701721.1 pilin Machinery gene
  V5F97_RS09505 (V5F97_09545) pilE 1821884..1822294 (+) 411 WP_353114486.1 pilin Machinery gene
  V5F97_RS09510 (V5F97_09550) thiC 1822782..1824683 (-) 1902 WP_047918965.1 phosphomethylpyrimidine synthase ThiC -
  V5F97_RS09520 (V5F97_09560) - 1825281..1826156 (+) 876 WP_003686971.1 NUDIX hydrolase family protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17714.07 Da        Isoelectric Point: 9.8038

>NTDB_id=936627 V5F97_RS09495 WP_269472471.1 1820674..1821162(+) (pilE) [Neisseria gonorrhoeae strain WHO_alpha_2024]
MGIRNVKSKETVLPDKFPYRQTRIPARAQVSEAILLAEGQKSAVTEYYLNHGKWPENNDSAGVASPPSNIKGKYVESVTV
ENGVVTAKMLSSGVNKEIQGKKLSLWAKREAGSVKWFCGRPVKRDAKDGTDDVAKDGKDNEKIDTKHLPSTCRDESSLPG
IA

Nucleotide


Download         Length: 489 bp        

>NTDB_id=936627 V5F97_RS09495 WP_269472471.1 1820674..1821162(+) (pilE) [Neisseria gonorrhoeae strain WHO_alpha_2024]
GTGGGAATCCGGAACGTAAAATCTAAAGAAACCGTTTTACCCGATAAGTTTCCGTACCGACAGACCCGGATTCCCGCCCG
CGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTACCGAATATTACCTGAATCACGGCAAAT
GGCCGGAAAACAACGACTCTGCCGGCGTGGCATCCCCCCCCTCCAACATCAAAGGCAAATATGTTGAAAGCGTTACGGTC
GAAAACGGCGTCGTTACCGCCAAAATGCTTTCAAGCGGCGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGC
CAAGCGTGAAGCCGGTTCGGTAAAATGGTTCTGCGGACGGCCGGTTAAGCGCGACGCCAAAGACGGCACCGACGACGTCG
CCAAAGACGGCAAAGACAACGAAAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCGTTGCCGGGT
ATTGCCTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(26-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

77.273

81.481

0.63
  pilE Neisseria gonorrhoeae strain FA1090

74.242

81.481

0.605