Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5F97_RS09375 Genome accession   NZ_CP145057
Coordinates   1798136..1798564 (+) Length   142 a.a.
NCBI ID   WP_050169685.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_alpha_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1793136..1803564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F97_RS09345 (V5F97_09385) - 1793343..1793719 (-) 377 Protein_1818 transposase -
  V5F97_RS09350 (V5F97_09390) - 1794028..1794153 (-) 126 Protein_1819 IS110 family transposase -
  V5F97_RS09355 (V5F97_09395) - 1794696..1795088 (+) 393 Protein_1820 pilin -
  V5F97_RS09360 (V5F97_09400) - 1795129..1795488 (+) 360 Protein_1821 pilin -
  V5F97_RS09365 (V5F97_09405) - 1796014..1796400 (+) 387 Protein_1822 pilin -
  V5F97_RS09370 (V5F97_09410) lpxC 1797106..1798029 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  V5F97_RS09375 (V5F97_09415) pilE 1798136..1798564 (+) 429 WP_050169685.1 pilin Machinery gene
  V5F97_RS09380 (V5F97_09420) - 1798687..1798805 (+) 119 Protein_1825 pilin -
  V5F97_RS09385 (V5F97_09425) - 1799738..1799872 (+) 135 WP_353114480.1 hypothetical protein -
  V5F97_RS09390 (V5F97_09430) - 1799857..1800555 (+) 699 WP_030003512.1 opacity family porin -
  V5F97_RS09395 (V5F97_09435) - 1800569..1800742 (+) 174 WP_353114482.1 hypothetical protein -
  V5F97_RS09400 (V5F97_09440) pilA 1800820..1802073 (-) 1254 WP_047919725.1 signal recognition particle-docking protein FtsY Machinery gene

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15481.28 Da        Isoelectric Point: 8.4701

>NTDB_id=936625 V5F97_RS09375 WP_050169685.1 1798136..1798564(+) (pilE) [Neisseria gonorrhoeae strain WHO_alpha_2024]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNNGIWPKDNTSAGVASSSSIKGKYVKEVEVKNGVVTAEMKSDGVNKEIK
DKRLSLWAKRENGSVKWFCGQPVKRDAGAKTGADDVKADGKDTDKINTKHLPSTCRDEHNAT

Nucleotide


Download         Length: 429 bp        

>NTDB_id=936625 V5F97_RS09375 WP_050169685.1 1798136..1798564(+) (pilE) [Neisseria gonorrhoeae strain WHO_alpha_2024]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATAACGGCATATGGCCGAAAGACAACACTTCTGCCGGCGTGGCATCTTCTTCATCAATCAAAGGCA
AATATGTTAAAGAGGTTGAAGTTAAAAACGGCGTCGTTACCGCCGAAATGAAATCAGACGGCGTAAACAAAGAAATCAAA
GACAAAAGACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGACGC
CGGCGCCAAAACCGGCGCCGACGACGTCAAAGCCGACGGCAAAGACACCGACAAAATCAACACCAAGCACCTGCCGTCAA
CCTGCCGCGATGAACATAATGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

69.444

100

0.704
  pilE Neisseria gonorrhoeae MS11

68.571

98.592

0.676