Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   V5F97_RS01760 Genome accession   NZ_CP145057
Coordinates   354109..354912 (-) Length   267 a.a.
NCBI ID   WP_050169637.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_alpha_2024     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 349109..359912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F97_RS01750 (V5F97_01755) - 351513..351788 (-) 276 WP_153707850.1 hypothetical protein -
  V5F97_RS01755 (V5F97_01760) comA 351820..354039 (+) 2220 WP_154236097.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V5F97_RS01760 (V5F97_01765) comL 354109..354912 (-) 804 WP_050169637.1 outer membrane protein assembly factor BamD Machinery gene
  V5F97_RS01765 (V5F97_01770) rluD 354911..356035 (+) 1125 WP_003687642.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  V5F97_RS01770 (V5F97_01775) - 356188..357135 (-) 948 Protein_342 bile acid:sodium symporter family protein -
  V5F97_RS01775 (V5F97_01780) - 357212..357436 (-) 225 WP_225577482.1 hypothetical protein -
  V5F97_RS01780 (V5F97_01785) pgeF 357589..358368 (+) 780 WP_003690756.1 peptidoglycan editing factor PgeF -
  V5F97_RS01785 (V5F97_01790) lptE 358420..358899 (+) 480 WP_003690758.1 LPS assembly lipoprotein LptE -
  V5F97_RS01790 (V5F97_01795) holA 358901..359899 (+) 999 WP_003690761.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30837.92 Da        Isoelectric Point: 9.3372

>NTDB_id=936594 V5F97_RS01760 WP_050169637.1 354109..354912(-) (comL) [Neisseria gonorrhoeae strain WHO_alpha_2024]
MKKILLTVSLGLALSACATQGTADKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAY
AYYKDDQKDKALAAIERFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMVKLVDALGGNEMSVARYYMKRGAYIAAANRAKKIIGSYQNTRYVEESLAILELAYKKLDKPQLAADTRRV
LETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=936594 V5F97_RS01760 WP_050169637.1 354109..354912(-) (comL) [Neisseria gonorrhoeae strain WHO_alpha_2024]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACTCAAGGTACGGCCGACAAAGATGC
CCAGATTACCCAAGATTGGAGTGTGGAGAAGCTCTATGCCGAAGCCCAGGACGAATTGAACAGCAGCAATTATACGCGGG
CTGTCAAGTTATACGAAATCTTGGAATCGCGCTTCCCCACCAGCCGCCATGCCCGGCAATCCCAACTGGATACCGCATAC
GCCTATTATAAAGACGATCAAAAAGACAAGGCTCTGGCGGCAATCGAACGCTTCCGCCGCCTCCATCCGCAGCATCCGAA
CATGGATTACGCGCTGTACCTGCGCGGCTTGGTGCTGTTTAACGAAGATCAGTCCTTCCTGAACAAACTGGCCTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCGTACCAGGCGTTTGCGGAACTCGTCCAACGCTTCCCGAACAGC
AAATACGCCGCCGATGCAACCGCACGCATGGTCAAACTGGTCGATGCTTTGGGCGGCAATGAAATGTCGGTGGCGCGTTA
CTACATGAAACGCGGCGCATATATCGCCGCCGCCAACCGCGCCAAAAAAATTATCGGCAGCTATCAAAATACACGCTATG
TCGAAGAATCACTGGCCATATTGGAACTTGCCTACAAGAAGTTGGACAAGCCCCAGCTTGCCGCCGATACGCGCCGCGTA
TTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCTTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTGGCA
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

99.625

100

0.996
  comL Neisseria meningitidis MC58

95.88

100

0.959