Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5F98_RS11580 Genome accession   NZ_CP145052
Coordinates   2180657..2181088 (-) Length   143 a.a.
NCBI ID   WP_106278828.1    Uniprot ID   A0AB74ECX2
Organism   Neisseria gonorrhoeae strain WHO_F_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2175657..2186088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F98_RS11545 (V5F98_11560) - 2176697..2176978 (-) 282 WP_002212527.1 hypothetical protein -
  V5F98_RS11550 (V5F98_11565) - 2177093..2177395 (-) 303 WP_003694607.1 hypothetical protein -
  V5F98_RS11555 (V5F98_11570) - 2177423..2177653 (-) 231 WP_047923996.1 hypothetical protein -
  V5F98_RS11560 (V5F98_11575) - 2177880..2178080 (-) 201 WP_002212530.1 hypothetical protein -
  V5F98_RS11565 (V5F98_11580) - 2178084..2178395 (-) 312 WP_003694611.1 hypothetical protein -
  V5F98_RS11570 (V5F98_11585) - 2178407..2179621 (-) 1215 WP_003694614.1 replication initiation factor domain-containing protein -
  V5F98_RS11575 (V5F98_11590) pilE 2180322..2180618 (-) 297 WP_269472844.1 pilin Machinery gene
  V5F98_RS11580 (V5F98_11595) pilE 2180657..2181088 (-) 432 WP_106278828.1 pilin Machinery gene
  V5F98_RS11585 (V5F98_11600) - 2181604..2181948 (-) 345 Protein_2245 pilin -
  V5F98_RS11590 (V5F98_11605) - 2182152..2182502 (-) 351 Protein_2246 pilin -
  V5F98_RS11595 (V5F98_11610) - 2182529..2182999 (-) 471 WP_144996902.1 pilin -
  V5F98_RS11600 (V5F98_11615) pilE 2182932..2183456 (-) 525 WP_106278765.1 pilin Machinery gene
  V5F98_RS11605 (V5F98_11620) - 2183595..2183948 (-) 354 Protein_2249 pilin -
  V5F98_RS11610 (V5F98_11625) - 2183989..2184192 (-) 204 Protein_2250 pilin -
  V5F98_RS11615 (V5F98_11630) - 2184768..2185457 (-) 690 WP_003705080.1 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 15465.28 Da        Isoelectric Point: 7.1360

>NTDB_id=936534 V5F98_RS11580 WP_106278828.1 2180657..2181088(-) (pilE) [Neisseria gonorrhoeae strain WHO_F_2024]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGKWPEDNGNAGVASASDKIKGKYVQKVEVAKGVVTAEMKPSGVNNEI
KGKKLSLWGRRENGSVKWFCGQPVKRGDNAANDDVAKDDAADKIDTKHLPSTCRDEPSLPGIT

Nucleotide


Download         Length: 432 bp        

>NTDB_id=936534 V5F98_RS11580 WP_106278828.1 2180657..2181088(-) (pilE) [Neisseria gonorrhoeae strain WHO_F_2024]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTCAC
CGAGTATTACCTGAATCACGGCAAATGGCCGGAAGACAACGGTAATGCCGGCGTGGCATCCGCCTCCGACAAAATCAAAG
GCAAATATGTTCAGAAAGTTGAAGTCGCAAAAGGCGTCGTTACCGCCGAAATGAAACCAAGCGGCGTAAACAATGAAATC
AAAGGCAAAAAACTCTCCCTGTGGGGCAGGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGG
CGACAACGCCGCCAACGACGACGTCGCCAAAGACGACGCCGCCGACAAAATCGACACCAAGCACCTGCCGTCAACCTGCC
GCGATGAACCATCGTTGCCGGGTATTACCTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

71.429

97.902

0.699
  pilE Neisseria gonorrhoeae MS11

70.504

97.203

0.685