Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5F98_RS11375 Genome accession   NZ_CP145052
Coordinates   2144777..2145061 (-) Length   94 a.a.
NCBI ID   WP_095206342.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_F_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2139777..2150061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F98_RS11355 (V5F98_11370) - 2139964..2140905 (-) 942 WP_003686969.1 ABC transporter ATP-binding protein -
  V5F98_RS11360 (V5F98_11375) - 2140914..2141789 (-) 876 WP_003686971.1 NUDIX hydrolase family protein -
  V5F98_RS11370 (V5F98_11385) thiC 2142387..2144288 (+) 1902 WP_047924006.1 phosphomethylpyrimidine synthase ThiC -
  V5F98_RS11375 (V5F98_11390) pilE 2144777..2145061 (-) 285 WP_095206342.1 pilin Machinery gene
  V5F98_RS11380 (V5F98_11395) - 2145118..2145492 (-) 375 Protein_2204 pilin -
  V5F98_RS11385 (V5F98_11400) - 2146026..2146385 (-) 360 Protein_2205 pilin -
  V5F98_RS11390 (V5F98_11405) - 2146426..2146743 (-) 318 Protein_2206 pilin -
  V5F98_RS11395 (V5F98_11410) - 2146734..2147084 (-) 351 Protein_2207 pilin -
  V5F98_RS11400 (V5F98_11415) - 2147088..2147396 (+) 309 Protein_2208 NAD(P)-dependent oxidoreductase -
  V5F98_RS11405 (V5F98_11420) metG 2147471..2149525 (-) 2055 WP_047924035.1 methionine--tRNA ligase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10240.46 Da        Isoelectric Point: 9.1672

>NTDB_id=936530 V5F98_RS11375 WP_095206342.1 2144777..2145061(-) (pilE) [Neisseria gonorrhoeae strain WHO_F_2024]
MASSAEIKGKYVKSVTVANGVVTAEMKSDGVNKEIQGKKLSLWARRENGSVKWFCGQPVTRGDNNDDVTGTADDTKKIDT
KHLPSTCRDKHSDT

Nucleotide


Download         Length: 285 bp        

>NTDB_id=936530 V5F98_RS11375 WP_095206342.1 2144777..2145061(-) (pilE) [Neisseria gonorrhoeae strain WHO_F_2024]
GTGGCATCCTCCGCCGAAATCAAAGGCAAATATGTTAAAAGCGTTACGGTCGCAAACGGCGTCGTTACCGCCGAAATGAA
ATCAGACGGCGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGCCAGGCGTGAAAACGGTTCGGTAAAATGGT
TCTGCGGACAGCCGGTTACGCGCGGCGACAACAACGACGACGTCACCGGCACCGCCGACGACACCAAAAAAATCGACACC
AAGCACCTGCCGTCAACCTGCCGCGATAAACACTCTGACACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

70.526

100

0.713
  pilE Neisseria gonorrhoeae MS11

76.136

93.617

0.713