Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ACEPM5_RS01680 Genome accession   NZ_CP168725
Coordinates   365861..367177 (+) Length   438 a.a.
NCBI ID   WP_011000296.1    Uniprot ID   Q8Y2K3
Organism   Ralstonia pseudosolanacearum strain RUN6534     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 360861..372177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPM5_RS01660 (ACEPM5_01660) - 361036..361683 (-) 648 WP_011000292.1 alpha/beta hydrolase -
  ACEPM5_RS01665 (ACEPM5_01665) - 361707..362033 (-) 327 WP_011000293.1 ferredoxin -
  ACEPM5_RS01670 (ACEPM5_01670) - 362448..363734 (+) 1287 WP_011000294.1 dicarboxylate/amino acid:cation symporter -
  ACEPM5_RS01675 (ACEPM5_01675) - 363838..365835 (+) 1998 WP_011000295.1 sensor histidine kinase -
  ACEPM5_RS01680 (ACEPM5_01680) luxO 365861..367177 (+) 1317 WP_011000296.1 sigma-54 dependent transcriptional regulator Regulator
  ACEPM5_RS01685 (ACEPM5_01685) - 367256..367807 (-) 552 WP_029240201.1 TlpA disulfide reductase family protein -
  ACEPM5_RS01690 (ACEPM5_01690) - 367911..368426 (-) 516 WP_011000298.1 O-acetyl-ADP-ribose deacetylase -
  ACEPM5_RS01695 (ACEPM5_01695) - 368526..369086 (+) 561 WP_028852545.1 hypothetical protein -
  ACEPM5_RS01700 (ACEPM5_01700) - 369228..369704 (-) 477 WP_043876531.1 hypothetical protein -
  ACEPM5_RS01705 (ACEPM5_01705) - 369751..371241 (-) 1491 WP_011000301.1 tyrosinase family protein -

Sequence

Protein


Download         Length: 438 a.a.        Molecular weight: 47969.94 Da        Isoelectric Point: 6.0824

>NTDB_id=936503 ACEPM5_RS01680 WP_011000296.1 365861..367177(+) (luxO) [Ralstonia pseudosolanacearum strain RUN6534]
MSEGLNVLFIEDDPPVRQATAQSLELAGFQVQAYASAEEAVGRIDADFYGVVVSDLRLPGASGLDVLAHCQSFGTGIPVV
LVTGHGDITMAVQAMRDGAFDFIEKPFPAERLTETVRRAVERRALELENRALRRELAGPAAGTRIIGRSQAMASVRALID
NVAATDAPVLINGETGTGKELVARSLHTLSPRHDKPFIALNCGAVPEQIFESEMFGHEAGAFTGAGKRRIGKIEHASGGT
LFLDEIESMPLALQVKLLRVLQEGMLERLGSNASVRIDVRIVAAAKGDMEALIEAGGFRRDLYYRLNVVAIDLPPLRERR
EDIIPLFEHFLLEAAVRYQRPLPMLSERQRHELMQSNWPGNVRELRNAADRLVLGVGRTPVVSDAAEDGMPLKERVERYE
RTVIAETLARTGGSVHQAADILQVGRATLYDKIKRYGL

Nucleotide


Download         Length: 1317 bp        

>NTDB_id=936503 ACEPM5_RS01680 WP_011000296.1 365861..367177(+) (luxO) [Ralstonia pseudosolanacearum strain RUN6534]
ATGTCCGAAGGCTTGAACGTTCTCTTCATCGAAGACGATCCGCCCGTCCGCCAGGCCACCGCGCAGAGCCTGGAGCTTGC
CGGCTTCCAGGTCCAGGCCTACGCCAGCGCCGAGGAGGCGGTCGGCCGGATCGACGCCGATTTCTACGGCGTGGTCGTCA
GCGACCTGCGCCTGCCGGGCGCCAGCGGGCTCGACGTGCTGGCGCATTGCCAGTCGTTCGGCACCGGCATTCCGGTGGTG
CTCGTGACCGGCCACGGCGATATCACGATGGCCGTGCAGGCGATGCGCGACGGCGCGTTCGATTTCATCGAGAAGCCGTT
CCCCGCCGAGCGCCTGACCGAGACCGTGCGCCGCGCCGTCGAGCGCCGCGCGCTGGAGCTGGAAAACCGCGCCCTGCGCC
GCGAGCTGGCGGGGCCGGCGGCGGGCACGCGCATCATCGGCCGCTCCCAGGCGATGGCCTCGGTGCGCGCGCTGATCGAC
AACGTGGCCGCCACCGACGCGCCGGTGCTCATCAACGGCGAGACCGGCACCGGCAAGGAACTGGTCGCGCGCAGCCTGCA
CACGCTGTCGCCGCGCCACGACAAGCCGTTCATCGCGCTGAACTGCGGCGCGGTGCCCGAGCAGATCTTCGAGAGCGAGA
TGTTCGGCCATGAGGCCGGCGCCTTCACCGGCGCGGGCAAGCGGCGCATCGGCAAGATCGAGCACGCATCGGGCGGCACG
CTCTTCCTCGACGAGATCGAGAGCATGCCGCTGGCGCTGCAGGTCAAGCTGCTGCGTGTGCTGCAGGAGGGCATGCTCGA
GCGCCTGGGCTCCAACGCCTCGGTGCGCATCGACGTGCGCATCGTCGCCGCCGCCAAGGGCGACATGGAGGCGCTGATCG
AGGCCGGCGGCTTCCGGCGCGACCTGTACTATCGCCTGAACGTCGTCGCCATCGACCTGCCGCCACTGCGCGAGCGCCGC
GAAGACATCATCCCGCTGTTCGAGCACTTCCTGCTGGAGGCCGCCGTGCGCTATCAGCGTCCGTTGCCGATGCTGTCCGA
GCGCCAGCGGCACGAACTGATGCAATCGAACTGGCCCGGCAACGTGCGCGAGCTGCGCAATGCCGCCGATCGCCTGGTGC
TGGGCGTCGGCCGCACGCCCGTCGTCTCCGATGCGGCGGAAGACGGCATGCCGCTCAAGGAGCGGGTCGAGCGCTACGAG
CGCACGGTGATCGCGGAGACGCTGGCGCGCACCGGTGGCTCCGTCCACCAGGCCGCCGACATCCTGCAGGTCGGGCGCGC
GACGCTGTACGACAAGATCAAGCGCTACGGCCTCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-116)

Sigma-54 interaction domain (Sigma54_activat)

(145-311)

Bacterial regulatory protein, Fis family (HTH_8)

(397-436)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y2K3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

38.626

96.347

0.372
  pilR Pseudomonas aeruginosa PAK

36.303

100

0.372