Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5G18_RS10775 Genome accession   NZ_CP145045
Coordinates   2054176..2054610 (-) Length   144 a.a.
NCBI ID   WP_172616926.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_L_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2049176..2059610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G18_RS10750 (V5G18_10790) - 2049572..2050726 (+) 1155 WP_010358927.1 NnrS family protein -
  V5G18_RS10755 (V5G18_10795) - 2050784..2051656 (-) 873 WP_003693577.1 prephenate dehydrogenase -
  V5G18_RS10760 (V5G18_10800) - 2051741..2052553 (+) 813 WP_003701591.1 carbon-nitrogen hydrolase family protein -
  V5G18_RS10765 (V5G18_10805) - 2052707..2052865 (+) 159 WP_154235844.1 hypothetical protein -
  V5G18_RS10770 (V5G18_10810) - 2052839..2053632 (-) 794 Protein_2082 opacity family porin -
  V5G18_RS10775 (V5G18_10815) pilE 2054176..2054610 (-) 435 WP_172616926.1 pilin Machinery gene
  V5G18_RS10780 (V5G18_10820) lpxC 2054716..2055639 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  V5G18_RS10785 (V5G18_10830) - 2056141..2056536 (-) 396 Protein_2085 pilin -
  V5G18_RS10790 (V5G18_10835) - 2057072..2057443 (-) 372 Protein_2086 pilin -
  V5G18_RS10795 (V5G18_10840) - 2057555..2057953 (-) 399 Protein_2087 pilin -
  V5G18_RS10800 (V5G18_10845) - 2058340..2058744 (-) 405 Protein_2088 pilin -
  V5G18_RS10805 (V5G18_10850) - 2058771..2059121 (-) 351 Protein_2089 pilin -
  V5G18_RS10810 (V5G18_10855) - 2059148..2059513 (-) 366 Protein_2090 pilin -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15472.32 Da        Isoelectric Point: 8.4728

>NTDB_id=936387 V5G18_RS10775 WP_172616926.1 2054176..2054610(-) (pilE) [Neisseria gonorrhoeae strain WHO_L_2024]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGKWPENNGDAGVASPATDIKGKYVKEVKVENGVVTAQMASTGVNNEI
KGKKLSLWAKRQDGSVKWFCGQPVTRTEANAKAGTDDVAKDDAAGKKIDTKHLPSTCRDKPTAT

Nucleotide


Download         Length: 435 bp        

>NTDB_id=936387 V5G18_RS10775 WP_172616926.1 2054176..2054610(-) (pilE) [Neisseria gonorrhoeae strain WHO_L_2024]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATCACGGCAAATGGCCGGAAAACAACGGTGATGCCGGCGTGGCATCCCCCGCCACCGACATCAAAG
GCAAATATGTTAAGGAAGTTAAAGTCGAAAACGGCGTCGTCACCGCCCAAATGGCTTCAACCGGCGTAAACAATGAAATC
AAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCAC
CGAAGCCAACGCCAAAGCCGGCACCGACGACGTCGCCAAAGACGACGCCGCCGGCAAAAAAATCGACACCAAGCACCTGC
CGTCAACCTGCCGCGATAAACCAACTGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

71.329

99.306

0.708
  pilE Neisseria gonorrhoeae strain FA1090

68.966

100

0.694