Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   V5G13_RS02685 Genome accession   NZ_CP145041
Coordinates   521499..522110 (+) Length   203 a.a.
NCBI ID   WP_106176299.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_M_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 516499..527110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G13_RS02660 (V5G13_02665) - 516822..517403 (-) 582 WP_003698180.1 superoxide dismutase -
  V5G13_RS02665 (V5G13_02670) dnaB 517566..518972 (+) 1407 WP_010359914.1 replicative DNA helicase -
  V5G13_RS02670 (V5G13_02675) pilH 519280..519942 (+) 663 WP_106176301.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5G13_RS02675 (V5G13_02680) pilI 519974..520591 (+) 618 WP_106176300.1 type IV pilus modification protein PilV Machinery gene
  V5G13_RS02680 (V5G13_02685) pilJ 520588..521520 (+) 933 WP_003692822.1 PilW family protein Machinery gene
  V5G13_RS02685 (V5G13_02690) pilK 521499..522110 (+) 612 WP_106176299.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5G13_RS02690 (V5G13_02695) pilL 522112..522585 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  V5G13_RS02695 (V5G13_02700) - 522655..522963 (-) 309 WP_025456241.1 AzlD family protein -
  V5G13_RS02700 (V5G13_02705) - 522960..523671 (-) 712 Protein_522 AzlC family ABC transporter permease -
  V5G13_RS02705 (V5G13_02710) dut 523837..524289 (+) 453 WP_003701071.1 dUTP diphosphatase -
  V5G13_RS02710 (V5G13_02715) dapC 524361..525548 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  V5G13_RS02715 (V5G13_02720) yaaA 525704..526483 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22049.97 Da        Isoelectric Point: 8.0862

>NTDB_id=936305 V5G13_RS02685 WP_106176299.1 521499..522110(+) (pilK) [Neisseria gonorrhoeae strain WHO_M_2024]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNDNGNEEAFGNIVVQGKPTVEVVKRSCPAKSGKNSTGLCIDNQGVEYKKGTGNVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=936305 V5G13_RS02685 WP_106176299.1 521499..522110(+) (pilK) [Neisseria gonorrhoeae strain WHO_M_2024]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GACAGTAAGGTTACGTTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATGATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGTGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

95.567

100

0.956