Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   V5G08_RS02330 Genome accession   NZ_CP145037
Coordinates   452389..453000 (+) Length   203 a.a.
NCBI ID   WP_010951047.1    Uniprot ID   Q5F9E3
Organism   Neisseria gonorrhoeae strain WHO_O_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 447389..458000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G08_RS02305 (V5G08_02310) - 447667..448248 (-) 582 WP_047918049.1 superoxide dismutase -
  V5G08_RS02310 (V5G08_02315) dnaB 448411..449817 (+) 1407 WP_003690896.1 replicative DNA helicase -
  V5G08_RS02315 (V5G08_02320) pilH 450125..450790 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5G08_RS02320 (V5G08_02325) pilV 450822..451433 (+) 612 WP_047925982.1 type IV pilus modification protein PilV Machinery gene
  V5G08_RS02325 (V5G08_02330) pilJ 451430..452410 (+) 981 WP_047925983.1 PilW family protein Machinery gene
  V5G08_RS02330 (V5G08_02335) pilK 452389..453000 (+) 612 WP_010951047.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5G08_RS02335 (V5G08_02340) pilL 453002..453475 (+) 474 WP_171000154.1 PilX family type IV pilin Machinery gene
  V5G08_RS02340 (V5G08_02345) - 453545..453853 (-) 309 WP_010951048.1 AzlD family protein -
  V5G08_RS02345 (V5G08_02350) - 453850..454558 (-) 709 Protein_457 AzlC family ABC transporter permease -
  V5G08_RS02350 (V5G08_02355) dut 454724..455176 (+) 453 WP_047925987.1 dUTP diphosphatase -
  V5G08_RS02355 (V5G08_02360) dapC 455254..456441 (+) 1188 WP_003687924.1 succinyldiaminopimelate transaminase -
  V5G08_RS02360 (V5G08_02365) yaaA 456752..457531 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 21966.90 Da        Isoelectric Point: 8.0862

>NTDB_id=936256 V5G08_RS02330 WP_010951047.1 452389..453000(+) (pilK) [Neisseria gonorrhoeae strain WHO_O_2024]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNNNGSEEAFGNIVVQGKPAVEAVKRSCPAKSGKNSTDLCIDNKGMEYNKGAAGVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=936256 V5G08_RS02330 WP_010951047.1 452389..453000(+) (pilK) [Neisseria gonorrhoeae strain WHO_O_2024]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GACAGTAAGGTTACGTTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAG
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCCCGCCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGACCTGTGCATTGACAATAAAGGGATGGAATATAATAAAGGCGCGGCAGGCGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5F9E3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

92.611

100

0.926