Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilJ   Type   Machinery gene
Locus tag   V5G08_RS02325 Genome accession   NZ_CP145037
Coordinates   451430..452410 (+) Length   326 a.a.
NCBI ID   WP_047925983.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_O_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 446430..457410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G08_RS02300 (V5G08_02305) - 446926..447435 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  V5G08_RS02305 (V5G08_02310) - 447667..448248 (-) 582 WP_047918049.1 superoxide dismutase -
  V5G08_RS02310 (V5G08_02315) dnaB 448411..449817 (+) 1407 WP_003690896.1 replicative DNA helicase -
  V5G08_RS02315 (V5G08_02320) pilH 450125..450790 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5G08_RS02320 (V5G08_02325) pilV 450822..451433 (+) 612 WP_047925982.1 type IV pilus modification protein PilV Machinery gene
  V5G08_RS02325 (V5G08_02330) pilJ 451430..452410 (+) 981 WP_047925983.1 PilW family protein Machinery gene
  V5G08_RS02330 (V5G08_02335) pilK 452389..453000 (+) 612 WP_010951047.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5G08_RS02335 (V5G08_02340) pilL 453002..453475 (+) 474 WP_171000154.1 PilX family type IV pilin Machinery gene
  V5G08_RS02340 (V5G08_02345) - 453545..453853 (-) 309 WP_010951048.1 AzlD family protein -
  V5G08_RS02345 (V5G08_02350) - 453850..454558 (-) 709 Protein_457 AzlC family ABC transporter permease -
  V5G08_RS02350 (V5G08_02355) dut 454724..455176 (+) 453 WP_047925987.1 dUTP diphosphatase -
  V5G08_RS02355 (V5G08_02360) dapC 455254..456441 (+) 1188 WP_003687924.1 succinyldiaminopimelate transaminase -

Sequence


Protein


Download         Length: 326 a.a.        Molecular weight: 35901.07 Da        Isoelectric Point: 9.8167

>NTDB_id=936255 V5G08_RS02325 WP_047925983.1 451430..452410(+) (pilJ) [Neisseria gonorrhoeae strain WHO_O_2024]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSIIVLIAVVSSYFTSRKLNDVANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMPEHTKGDIVDSSNQTQSNLAKPGAKQENPLFSLKRSGMDKQLIPVAESIDIKYPGFIQRLNALVFQYGIDDLDASA
ETVVVSSCSKIAKPGKKISTLQEAKSALQITNDDKQNGNITRQKHVVNAYAVGRFGNNEESLFRFQLDDKGKWGNPQLLV
KKVKRMDVRYIYVSGCPEDEDAGKEEKFRYTNKFDKSKNAVTPAGVEVLLDSGLNAKIAASSDNSIYAYRINATIRGGNV
CANRTL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=936255 V5G08_RS02325 WP_047925983.1 451430..452410(+) (pilJ) [Neisseria gonorrhoeae strain WHO_O_2024]
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTATAATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGTGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGCCCGAGCATACTAAAGGCGATATTGTTGATTCAAGTAATCAAACTCAATCTAACCTTGCAAAACCCGG
TGCCAAACAAGAAAATCCCCTTTTTTCCTTAAAAAGGAGCGGCATGGATAAACAACTGATTCCCGTTGCTGAATCCATAG
ATATTAAATATCCGGGTTTTATCCAGCGCCTTAACGCATTGGTTTTCCAATACGGTATCGATGATCTTGATGCGAGTGCT
GAGACTGTTGTAGTCAGCAGCTGTTCCAAAATAGCAAAACCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGC
ATTACAGATTACTAATGATGATAAACAAAATGGAAATATCACCCGTCAGAAACATGTGGTCAATGCCTATGCGGTCGGCA
GGTTTGGCAATAATGAGGAAAGTTTGTTCCGCTTCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGTG
AAAAAGGTTAAACGTATGGATGTGCGGTATATTTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAAAA
ATTCAGATATACGAATAAATTCGACAAATCCAAAAATGCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGCC
TTAATGCCAAGATTGCCGCTTCTTCAGACAATAGTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTA
TGCGCAAACAGAACACTTTGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

75.684

100

0.764