Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5F95_RS03220 Genome accession   NZ_CP145032
Coordinates   627886..628305 (-) Length   139 a.a.
NCBI ID   WP_149032509.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_Q_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 622886..633305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F95_RS03195 (V5F95_03200) - 623700..624038 (+) 339 WP_003689188.1 hypothetical protein -
  V5F95_RS03200 (V5F95_03205) - 624101..625735 (+) 1635 WP_003689187.1 phosphoethanolamine transferase -
  V5F95_RS03205 (V5F95_03210) - 625810..626367 (+) 558 WP_003691591.1 nitroreductase family protein -
  V5F95_RS03210 (V5F95_03215) - 626385..626594 (+) 210 WP_047922763.1 hypothetical protein -
  V5F95_RS03215 (V5F95_03220) - 626568..627349 (-) 782 Protein_621 opacity family porin -
  V5F95_RS03220 (V5F95_03225) pilE 627886..628305 (-) 420 WP_149032509.1 pilin Machinery gene
  V5F95_RS03225 (V5F95_03230) - 628526..629281 (-) 756 WP_003694028.1 formylglycine-generating enzyme family protein -
  V5F95_RS03230 (V5F95_03235) nirK 629459..630637 (-) 1179 WP_012503760.1 copper-containing nitrite reductase -
  V5F95_RS03235 (V5F95_03240) - 631011..633266 (+) 2256 WP_003691589.1 nitric-oxide reductase large subunit -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15053.91 Da        Isoelectric Point: 9.4287

>NTDB_id=936162 V5F95_RS03220 WP_149032509.1 627886..628305(-) (pilE) [Neisseria gonorrhoeae strain WHO_Q_2024]
MFQGPDSRLRGNDEAILLAEGQKSAVTEYYLNHGEWPENNTSAGVASASDIKGKYVKEVKVEKGVVTAQMASTGVNKEIK
GKKLSLWAKRENGSVKWFCGQPVQRTDKAGTVADAAADNEKINTKHLPSTCRDKASDAK

Nucleotide


Download         Length: 420 bp        

>NTDB_id=936162 V5F95_RS03220 WP_149032509.1 627886..628305(-) (pilE) [Neisseria gonorrhoeae strain WHO_Q_2024]
TTGTTCCAAGGTCCGGACTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAATATTACCTGAATCACGGCGAATGGCCGGAAAACAACACTTCTGCCGGCGTGGCATCCGCTTCAGACATCAAAGGCA
AATATGTTAAGGAAGTTAAAGTCGAAAAAGGCGTCGTTACCGCCCAAATGGCTTCAACCGGCGTAAACAAAGAAATCAAA
GGCAAAAAACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTCAGCGCACCGA
CAAAGCCGGCACCGTTGCCGACGCCGCCGCCGACAACGAAAAAATCAACACCAAGCACCTGCCGTCAACCTGCCGCGATA
AGGCATCTGATGCCAAATGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

81.102

91.367

0.741
  pilE Neisseria gonorrhoeae strain FA1090

79.839

89.209

0.712