Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5G17_RS09525 Genome accession   NZ_CP145024
Coordinates   1819900..1820370 (+) Length   156 a.a.
NCBI ID   WP_003701721.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_U_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1814900..1825370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G17_RS09500 (V5G17_09525) metG 1815804..1817858 (+) 2055 WP_106333499.1 methionine--tRNA ligase -
  V5G17_RS09505 (V5G17_09530) - 1817933..1818241 (-) 309 Protein_1850 NAD(P)-dependent oxidoreductase -
  V5G17_RS09510 (V5G17_09535) - 1818245..1818577 (+) 333 Protein_1851 pilin -
  V5G17_RS09515 (V5G17_09540) - 1818604..1818959 (+) 356 Protein_1852 pilin -
  V5G17_RS09520 (V5G17_09545) pilE 1819373..1819861 (+) 489 WP_269472471.1 pilin Machinery gene
  V5G17_RS09525 (V5G17_09550) pilE 1819900..1820370 (+) 471 WP_003701721.1 pilin Machinery gene
  V5G17_RS09530 (V5G17_09555) pilE 1820634..1821089 (+) 456 WP_269472472.1 pilin Machinery gene
  V5G17_RS09535 (V5G17_09560) - 1821028..1821365 (+) 338 Protein_1856 pilin -
  V5G17_RS09540 (V5G17_09565) thiC 1821844..1823745 (-) 1902 WP_047918965.1 phosphomethylpyrimidine synthase ThiC -
  V5G17_RS09550 (V5G17_09575) - 1824343..1825218 (+) 876 WP_003686971.1 NUDIX hydrolase family protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17032.54 Da        Isoelectric Point: 9.7744

>NTDB_id=936043 V5G17_RS09525 WP_003701721.1 1819900..1820370(+) (pilE) [Neisseria gonorrhoeae strain WHO_U_2024]
MASSDKIKGKYVQSVTVAKGVVTAQMASTGVNKEIKDKRLSLWAKREDGSVKWFCGQPVKRTGDNDDDVTADKDDKEIDT
KHLPSTCRDASSAVCIETPPTAFYKNTQTVIPTKVGIRNAKSKETVLPDKFLRRSVGIPACAGMTAERFLLLPINS

Nucleotide


Download         Length: 471 bp        

>NTDB_id=936043 V5G17_RS09525 WP_003701721.1 1819900..1820370(+) (pilE) [Neisseria gonorrhoeae strain WHO_U_2024]
GTGGCATCCTCCGACAAAATCAAAGGCAAATATGTTCAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCCAAATGGC
TTCAACCGGCGTAAACAAAGAAATCAAAGACAAAAGACTCTCCCTGTGGGCCAAGCGTGAAGACGGTTCGGTAAAATGGT
TCTGCGGACAGCCGGTTAAGCGCACCGGCGACAACGACGACGACGTTACCGCCGACAAAGACGACAAAGAAATCGACACC
AAGCACCTGCCGTCAACCTGCCGCGACGCTTCATCTGCCGTTTGCATAGAAACACCACCTACGGCTTTCTATAAAAATAC
CCAAACCGTCATTCCCACAAAAGTGGGAATCCGGAACGCAAAATCTAAAGAAACCGTTTTACCCGATAAGTTTCTGCGCC
GATCGGTCGGGATTCCCGCCTGCGCGGGAATGACGGCGGAGCGGTTTCTGTTGCTCCCGATAAATTCCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

80.645

59.615

0.481
  pilE Neisseria gonorrhoeae MS11

71.264

55.769

0.397