Detailed information NTG0935897

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: V5G14_RS08880
• Genome accession: NZ_CP145017
• Coordinates: 1698125..1698985 (+)
• Length: 286 a.a.
• NCBI ID: WP_003689814.1
• Uniprot ID: A0AA44U9R8
• Organism: Neisseria gonorrhoeae strain WHO_Y_2024
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1693125..1703985

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V5G14_RS08865 (V5G14_08880)	dapD	1693635..1694456 (-)	822	WP_003689804.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	-
V5G14_RS08870 (V5G14_08885)	pgi	1694666..1696309 (-)	1644	WP_003689806.1	glucose-6-phosphate isomerase	-
V5G14_RS08875 (V5G14_08890)	pilG	1696819..1698051 (+)	1233	WP_003689811.1	type 4 pilus assembly protein PilG	Machinery gene
V5G14_RS08880 (V5G14_08895)	pilD	1698125..1698985 (+)	861	WP_003689814.1	A24 family peptidase	Machinery gene
V5G14_RS08885 (V5G14_08900)	coaE	1698982..1699614 (+)	633	WP_003689816.1	dephospho-CoA kinase	-
V5G14_RS08890 (V5G14_08905)	-	1699607..1699816 (+)	210	WP_003696096.1	DNA gyrase inhibitor YacG	-
V5G14_RS08895 (V5G14_08910)	pilF	1699902..1701578 (-)	1677	WP_003689817.1	type IV-A pilus assembly ATPase PilB	Machinery gene
V5G14_RS08905 (V5G14_08920)	-	1701916..1702362 (-)	447	WP_003689818.1	DUF441 domain-containing protein	-
V5G14_RS08910 (V5G14_08925)	-	1702366..1703340 (-)	975	WP_003689819.1	polyprenyl synthetase family protein	-
V5G14_RS08915 (V5G14_08930)	rplU	1703564..1703872 (+)	309	WP_003691838.1	50S ribosomal protein L21	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31332.34 Da
• Isoelectric Point: 8.9561

>NTDB_id=935897 V5G14_RS08880 WP_003689814.1 1698125..1698985(+) (pilD) [Neisseria gonorrhoeae strain WHO_Y_2024]
MSDLSVLSPFAVPLAAVLGLLVGSFLNVVIYRVPVMMERGWTVFAKEHLNLPLTDDESRTFNLMKPDSCCPKCRVPIRAW
QNIPIVSYLLLRGKCASCQTKISIRYPLIELLTGVLFGLVAWQYGWSWITLGGLILTAFLISLTFIDADTQYLPDSMTLP
LIWLGLIFNLDGGFVPLQSAVLGAVAGYSSLWLLCAVYKLLTGKTGMGNGDFKLIAALGAWLGISALPVLIFVSSLIGLV
AAIVMRVAKGRHFAFGPALTVSGWIIFTANDSVWRAVNWWLTHPVR

Nucleotide

• Length: 861 bp

>NTDB_id=935897 V5G14_RS08880 WP_003689814.1 1698125..1698985(+) (pilD) [Neisseria gonorrhoeae strain WHO_Y_2024]
ATGTCTGATTTGTCTGTATTGTCGCCGTTTGCCGTGCCTTTGGCAGCAGTTTTGGGGCTGCTGGTCGGCAGCTTCCTGAA
TGTCGTCATTTACCGCGTACCCGTTATGATGGAACGCGGCTGGACGGTATTTGCCAAAGAACATTTAAACCTGCCGCTGA
CCGACGATGAAAGCCGTACCTTCAACCTGATGAAGCCGGATTCCTGCTGTCCCAAATGCCGTGTGCCGATACGCGCGTGG
CAGAACATCCCGATTGTCAGTTACCTGCTCCTGCGCGGCAAATGCGCTTCCTGCCAAACCAAAATCAGCATACGTTATCC
CTTAATCGAGCTGCTGACCGGCGTATTGTTCGGGCTGGTCGCCTGGCAATACGGCTGGTCTTGGATTACGCTGGGCGGTT
TGATACTGACCGCGTTTCTGATTTCCCTGACCTTTATCGATGCGGACACCCAATACCTGCCCGACTCGATGACATTACCC
TTGATCTGGCTGGGGCTGATATTTAATTTGGACGGCGGCTTCGTGCCTTTGCAGTCTGCCGTTTTAGGTGCGGTTGCCGG
CTATAGTTCATTATGGCTCTTATGTGCAGTGTATAAACTGCTCACAGGAAAAACCGGTATGGGCAACGGAGATTTCAAAC
TGATTGCCGCATTGGGCGCGTGGCTCGGCATATCCGCATTGCCCGTGCTGATTTTTGTTTCCTCTCTGATCGGTTTGGTC
GCGGCAATCGTTATGCGCGTCGCCAAGGGGCGGCATTTTGCCTTCGGCCCCGCACTGACAGTTTCGGGCTGGATAATTTT
TACGGCAAACGATTCCGTATGGCGGGCGGTCAACTGGTGGCTGACCCATCCGGTGAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (134-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	100	100	1
pilD	Vibrio cholerae strain A1552	44.792	100	0.451
pilD	Vibrio campbellii strain DS40M4	45.652	96.503	0.441
pilD	Acinetobacter baumannii D1279779	47.727	92.308	0.441
pilD	Acinetobacter nosocomialis M2	47.727	92.308	0.441