Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5G07_RS09520 Genome accession   NZ_CP145015
Coordinates   1814391..1814675 (+) Length   94 a.a.
NCBI ID   WP_269472700.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_Z_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1809391..1819675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G07_RS09495 (V5G07_09515) metG 1810767..1812821 (+) 2055 WP_047919072.1 methionine--tRNA ligase -
  V5G07_RS09500 (V5G07_09520) - 1812896..1813204 (-) 309 Protein_1848 NAD(P)-dependent oxidoreductase -
  V5G07_RS09505 (V5G07_09525) - 1813208..1813549 (+) 342 Protein_1849 pilin -
  V5G07_RS09510 (V5G07_09530) - 1813576..1813934 (+) 359 Protein_1850 pilin -
  V5G07_RS09515 (V5G07_09535) - 1813987..1814352 (+) 366 Protein_1851 pilin -
  V5G07_RS09520 (V5G07_09540) pilE 1814391..1814675 (+) 285 WP_269472700.1 pilin Machinery gene
  V5G07_RS09525 (V5G07_09545) - 1815202..1815597 (+) 396 Protein_1853 pilin -
  V5G07_RS09530 (V5G07_09550) - 1815775..1816152 (+) 378 Protein_1854 pilin -
  V5G07_RS09535 (V5G07_09555) - 1816163..1816519 (+) 357 Protein_1855 pilin -
  V5G07_RS09540 (V5G07_09560) thiC 1816998..1818899 (-) 1902 WP_047916857.1 phosphomethylpyrimidine synthase ThiC -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10279.58 Da        Isoelectric Point: 9.6549

>NTDB_id=935856 V5G07_RS09520 WP_269472700.1 1814391..1814675(+) (pilE) [Neisseria gonorrhoeae strain WHO_Z_2024]
MASASDIKGKYVKSVTVAKGVVTAQMKPDGVNNEIQDKRLSLWAKRENGSVKWFCGQPVKRDANNNDTVAADKDKEIDTK
HLPSTCRDKASDAT

Nucleotide


Download         Length: 285 bp        

>NTDB_id=935856 V5G07_RS09520 WP_269472700.1 1814391..1814675(+) (pilE) [Neisseria gonorrhoeae strain WHO_Z_2024]
GTGGCATCCGCCTCCGACATCAAAGGCAAATATGTTAAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCCAAATGAA
ACCAGACGGCGTAAACAATGAAATCCAAGACAAAAGACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAAATGGT
TCTGCGGACAGCCGGTTAAGCGCGACGCCAACAACAACGACACCGTTGCCGCCGACAAAGACAAAGAAATCGACACCAAG
CACCTGCCGTCAACCTGCCGCGATAAGGCATCTGATGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.626

96.809

0.713
  pilE Neisseria gonorrhoeae MS11

74.444

95.745

0.713