Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SAJP025_RS04550 Genome accession   NZ_AP025683
Coordinates   956485..957471 (+) Length   328 a.a.
NCBI ID   WP_000959276.1    Uniprot ID   A0AAJ4YXL4
Organism   Staphylococcus aureus strain JP025     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 951485..962471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAJP025_RS04530 (SAJP025_08570) - 951922..953568 (+) 1647 Protein_883 IS1182-like element ISSau3 family transposase -
  SAJP025_RS04535 (SAJP025_08580) trpS 953595..954584 (-) 990 WP_000448933.1 tryptophan--tRNA ligase -
  SAJP025_RS04540 (SAJP025_08590) spxA 954879..955274 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  SAJP025_RS04545 (SAJP025_08600) mecA 955645..956364 (+) 720 WP_001217728.1 adaptor protein MecA -
  SAJP025_RS04550 (SAJP025_08610) coiA 956485..957471 (+) 987 WP_000959276.1 competence protein CoiA family protein Machinery gene
  SAJP025_RS04555 (SAJP025_08620) pepF 957519..959327 (+) 1809 WP_000082722.1 oligoendopeptidase F -
  SAJP025_RS04560 (SAJP025_08630) yjbH 959787..960593 (-) 807 WP_000896691.1 protease adaptor protein YjbH -
  SAJP025_RS04565 (SAJP025_08640) - 960616..960981 (-) 366 WP_000214067.1 truncated hemoglobin YjbI -
  SAJP025_RS04570 (SAJP025_08650) - 961085..961678 (-) 594 WP_000224620.1 CYTH domain-containing protein -
  SAJP025_RS04575 (SAJP025_08660) - 961864..962211 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38741.30 Da        Isoelectric Point: 9.6486

>NTDB_id=93571 SAJP025_RS04550 WP_000959276.1 956485..957471(+) (coiA) [Staphylococcus aureus strain JP025]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIIMFQQIQYLGGHKYVAEKKNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDHEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=93571 SAJP025_RS04550 WP_000959276.1 956485..957471(+) (coiA) [Staphylococcus aureus strain JP025]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATTATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAAGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTACAG
TTAACTGATCACGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

96.951

100

0.97
  coiA Staphylococcus aureus N315

96.951

100

0.97

Multiple sequence alignment