Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R8954_RS00940 Genome accession   NZ_AP028365
Coordinates   183617..185122 (-) Length   501 a.a.
NCBI ID   WP_002882259.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10632     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 178617..190122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8954_RS00910 (B10632_01770) - 178819..180003 (-) 1185 WP_020246837.1 metallophosphoesterase -
  R8954_RS00915 (B10632_01780) - 180013..180222 (-) 210 WP_002851709.1 alkylphosphonate utilization protein -
  R8954_RS00920 (B10632_01790) - 180215..180934 (-) 720 WP_002873212.1 TerC family protein -
  R8954_RS00925 (B10632_01800) purN 181006..181572 (-) 567 WP_317726147.1 phosphoribosylglycinamide formyltransferase -
  R8954_RS00930 (B10632_01810) - 181563..182933 (-) 1371 WP_032586634.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  R8954_RS00935 (B10632_01820) - 182917..183615 (-) 699 WP_002826913.1 NYN domain-containing protein -
  R8954_RS00940 (B10632_01830) comM 183617..185122 (-) 1506 WP_002882259.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R8954_RS00945 (B10632_01840) def 185119..185646 (-) 528 WP_002882260.1 peptide deformylase -
  R8954_RS00950 (B10632_01850) clpP 185682..186266 (-) 585 WP_002806309.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  R8954_RS00955 (B10632_01860) tig 186266..187600 (-) 1335 WP_032586635.1 trigger factor -
  R8954_RS00960 (B10632_01870) folE 187743..188315 (+) 573 WP_002869503.1 GTP cyclohydrolase I FolE -
  R8954_RS00965 (B10632_01880) fliI 188315..189700 (+) 1386 WP_002900770.1 flagellar protein export ATPase FliI -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56356.36 Da        Isoelectric Point: 8.7417

>NTDB_id=93570 R8954_RS00940 WP_002882259.1 183617..185122(-) (comM) [Campylobacter jejuni strain BCH-10632]
MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASVAIKESVERIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDL
AIALLILLQNEELDDFFVVGELGLDGSIKSTNELFSLLLFLSAKIKKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
FKEKNYENFRFSHNHPLFASPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALGMHNILLEGSPGSGKSMCAKRLV
YIMPPQSLSEILTQNAYMSLDSKDCEFTKIRAFRHPHHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIE
SLREPLEDHKIHISRVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLYVAMDEISK
DDKTSISSKEMSEKILQAFIFSKKRGQKEFNGKLKDEDLSRFCVLEKDAKDTLDLAISRYNLSLRSLNKILKVSRSIADL
EQSLNINKTHILEALSFRARN

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=93570 R8954_RS00940 WP_002882259.1 183617..185122(-) (comM) [Campylobacter jejuni strain BCH-10632]
ATGAAAAAACTAAAGTGCATAAGCTTTCATGAAGGCTTAGACATTATAGAGGTAGAATCCACTTTTACAAGAGGTTTGCC
AAATTTAAGCATAGTAGGACTTGCAAGTGTAGCGATTAAGGAAAGTGTCGAACGCATCAAAGCCACGCTTTTAAGTTGTG
ATTTTGCTTTTCCTGCTAAAAAAATTACTATTAATCTTAGTCCTTCAGGCATCCCAAAAAAGGGGTCGCATTTTGATTTG
GCTATCGCTTTATTAATCCTTTTGCAAAATGAAGAATTAGATGACTTTTTTGTAGTAGGAGAATTAGGACTTGATGGAAG
TATTAAAAGCACAAATGAGCTTTTTTCTTTGCTTTTGTTTCTTTCTGCTAAAATTAAAAAAGCTAAAATCGTTGTTCCAA
AAAGTATAGCACAAAAAGCTTCCATGATACCAAATTTAGAGGTTTATGGACTTGAAAATTTAAATGAAGCAATAGAGTTT
TTTAAAGAAAAAAATTATGAAAATTTTCGTTTTTCTCACAATCATCCTTTATTCGCAAGTCCTTTACAAATAGAAAATGA
AATTTTTTTACAAAATATGGATTTTAAACTTGATTTTAAAGATATCAAAGGGCAGGAAAAAGCTAAAAGAGCTTGTATGA
TAGCTGCTTTAGGTATGCATAATATCTTACTTGAAGGAAGTCCAGGAAGTGGTAAAAGTATGTGTGCTAAACGCCTTGTT
TATATCATGCCTCCTCAAAGTTTAAGTGAAATTTTAACGCAAAATGCTTATATGTCTTTAGATTCAAAAGATTGTGAATT
TACTAAAATTCGTGCTTTTCGTCATCCTCATCATACTTCTACAAGAGCAAGTATTTTTGGCGGAGGAACAAAAAATGCTA
GAATTGGAGAAGTCGCACTTGCAAATGGTGGAGTATTGTTTTTTGATGAATTTCCACATTTTAACAAGCAAATCATAGAG
AGTTTAAGAGAACCTTTGGAGGATCATAAAATTCATATTTCAAGAGTAAATTCTAAAATCACTTATGAAACAAAATTTAG
CTTTATAGCTGCCCAAAATCCTTGTCCTTGTGGAAATTTATTTTCTAAAAATCTTTCTTGTGTTTGTAGTGAAAATGAGA
TTAAAAAATACAAAAATCACATTTCAGCTCCTATTATGGATAGGATTGATCTTTATGTAGCTATGGATGAGATCAGCAAG
GATGATAAAACGAGTATAAGTTCTAAAGAAATGAGTGAAAAAATTTTACAAGCTTTTATTTTTAGTAAAAAACGGGGGCA
AAAAGAATTTAATGGGAAATTAAAAGATGAAGATTTAAGTCGTTTTTGTGTATTGGAAAAAGATGCCAAAGATACGCTAG
ATTTAGCAATTTCACGTTATAATCTTTCTTTGCGATCGCTTAATAAAATTTTAAAAGTTTCAAGAAGTATAGCGGATTTA
GAACAAAGTCTTAATATTAACAAAACCCATATTTTAGAAGCTTTAAGCTTTAGAGCAAGGAATTAA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)

Subunit ChlI of Mg-chelatase (ChlI)

(18-134)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

47.695

99.601

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

36.273

99.601

0.361

Multiple sequence alignment