Detailed information NTG0935569

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: PGK76_RS04510
• Genome accession: NZ_CP168322
• Coordinates: 973508..974674 (-)
• Length: 388 a.a.
• NCBI ID: WP_318161351.1
• Uniprot ID: -
• Organism: Riemerella anatipestifer strain RCAD0866
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 968508..979674

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PGK76_RS04495 (PGK76_004495)	-	969909..971186 (-)	1278	WP_318161354.1	thioredoxin family protein	-
PGK76_RS04500 (PGK76_004500)	-	971237..971494 (-)	258	WP_318161353.1	hypothetical protein	-
PGK76_RS04505 (PGK76_004505)	-	971501..973438 (-)	1938	WP_318161352.1	T9SS type A sorting domain-containing protein	-
PGK76_RS04510 (PGK76_004510)	clpX	973508..974674 (-)	1167	WP_318161351.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
PGK76_RS04515 (PGK76_004515)	-	974711..975097 (-)	387	WP_318161350.1	HIT family protein	-
PGK76_RS04520 (PGK76_004520)	greA	975116..975583 (-)	468	WP_004916971.1	transcription elongation factor GreA	-
PGK76_RS04525 (PGK76_004525)	-	975686..976150 (+)	465	WP_264309193.1	hypothetical protein	-
PGK76_RS04530 (PGK76_004530)	dtd	976156..976602 (+)	447	WP_161531190.1	D-aminoacyl-tRNA deacylase	-
PGK76_RS04535 (PGK76_004535)	sppA	976687..978441 (-)	1755	WP_161531189.1	signal peptide peptidase SppA	-
PGK76_RS04540 (PGK76_004540)	folK	978463..978888 (+)	426	WP_264309192.1	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	-

Sequence

Protein

• Length: 388 a.a.
• Molecular weight: 43744.27 Da
• Isoelectric Point: 5.5698

>NTDB_id=935569 PGK76_RS04510 WP_318161351.1 973508..974674(-) (clpX) [Riemerella anatipestifer strain RCAD0866]
MNNNQCSFCGRHRKEVQMLVSGQNGLICEHCIEQAHAFVKDNIQKEEFSPVNNLSELKKPREIKKTLDEYVIGQDQAKKQ
LSIAVYNHYKRLLHTSTKKDNDVEIEKSNIIMIGETGTGKTLLAKTIARELNVPFCIVDATILTEAGYVGEDVESILSRL
LMVADYDVEKAEKGIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKYIQVNTQNILF
IAGGAFDGIKEIIERRLNKQAIGFSKEKLDSEKDLAQILPQVNSTDLRKFGLIPELLGRFPVITYLDQLTKETMVRIMKE
PKNSIVNQFKALFKMDGIDLEFTDETLEKIVDETFEKGLGARGLRGTTEKVLENYMFDIDTINNNILL

Nucleotide

• Length: 1167 bp

>NTDB_id=935569 PGK76_RS04510 WP_318161351.1 973508..974674(-) (clpX) [Riemerella anatipestifer strain RCAD0866]
ATGAATAATAACCAGTGTTCTTTTTGCGGAAGACATCGTAAAGAAGTTCAAATGCTTGTTTCGGGACAAAATGGACTCAT
CTGCGAACATTGTATAGAACAGGCTCACGCATTTGTTAAAGACAATATTCAGAAAGAAGAGTTTTCTCCTGTAAACAACC
TCTCCGAACTAAAGAAACCTAGAGAAATTAAAAAAACTTTAGACGAATATGTCATCGGGCAAGACCAAGCTAAAAAACAA
CTTTCCATCGCAGTCTATAACCATTATAAAAGACTTCTTCACACTTCAACAAAAAAAGACAATGATGTTGAGATAGAAAA
ATCTAACATCATTATGATAGGTGAAACAGGCACAGGAAAAACCCTTTTAGCAAAGACCATAGCTAGAGAACTCAATGTAC
CTTTTTGTATTGTAGATGCTACCATACTTACCGAAGCTGGTTATGTAGGCGAAGATGTAGAGAGTATTTTATCTAGACTT
CTTATGGTCGCGGATTACGATGTAGAAAAAGCCGAAAAAGGCATTGTATTCATAGACGAAATAGATAAAATAGCGAGAAA
ATCAGATAATCCAAGCATCACAAGAGATGTATCAGGAGAAGGTGTACAGCAAGGATTACTAAAATTATTAGAAGGAAGCA
TCGTAAATGTACCGCCTCAAGGAGGAAGAAAACATCCTGACCAAAAATACATACAGGTAAACACTCAGAACATTTTATTT
ATTGCGGGAGGGGCTTTTGATGGTATAAAAGAGATTATAGAAAGGAGACTAAACAAACAAGCCATAGGATTCAGTAAAGA
AAAGTTAGACTCCGAAAAAGATTTGGCACAAATATTGCCACAAGTAAACTCAACGGATTTGAGAAAGTTCGGATTAATTC
CAGAACTTTTAGGTAGATTCCCTGTAATTACTTATTTAGACCAACTAACCAAAGAGACCATGGTAAGAATAATGAAAGAG
CCTAAAAACTCTATCGTTAATCAATTCAAAGCTCTTTTCAAAATGGACGGTATAGATTTAGAATTCACAGACGAAACCTT
AGAGAAAATTGTAGACGAAACTTTTGAAAAAGGATTAGGTGCAAGAGGACTTAGAGGCACTACAGAAAAGGTTTTAGAGA
ATTATATGTTTGACATTGATACTATTAACAATAATATTTTATTATAA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (5-40)

• AAA domain (Cdc48 subfamily) (AAA_2) (106-303)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (309-378)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	52.243	97.68	0.51
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	50.923	97.68	0.497