Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   PGK76_RS00235 Genome accession   NZ_CP168322
Coordinates   41460..43250 (+) Length   596 a.a.
NCBI ID   WP_185148441.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain RCAD0866     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 36460..48250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGK76_RS00205 (PGK76_000205) - 36647..37159 (+) 513 WP_154469137.1 NUDIX domain-containing protein -
  PGK76_RS00210 (PGK76_000210) - 37238..37744 (+) 507 WP_004916526.1 ferritin -
  PGK76_RS00215 (PGK76_000215) ruvB 37907..38929 (+) 1023 WP_154469136.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  PGK76_RS00220 (PGK76_000220) - 38966..39832 (+) 867 WP_038693534.1 MBL fold metallo-hydrolase -
  PGK76_RS00225 (PGK76_000225) coaE 39848..40438 (+) 591 WP_004916520.1 dephospho-CoA kinase -
  PGK76_RS00230 (PGK76_000230) - 40451..41440 (+) 990 WP_038693536.1 cation diffusion facilitator family transporter -
  PGK76_RS00235 (PGK76_000235) uvrC 41460..43250 (+) 1791 WP_185148441.1 excinuclease ABC subunit UvrC Machinery gene
  PGK76_RS00240 (PGK76_000240) - 43240..43650 (-) 411 WP_154469134.1 VanZ family protein -
  PGK76_RS00245 (PGK76_000245) lnt 43708..45351 (+) 1644 WP_154469133.1 apolipoprotein N-acyltransferase -
  PGK76_RS00250 (PGK76_000250) - 45385..46383 (+) 999 WP_154469132.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 69200.98 Da        Isoelectric Point: 9.0390

>NTDB_id=935547 PGK76_RS00235 WP_185148441.1 41460..43250(+) (uvrC) [Riemerella anatipestifer strain RCAD0866]
MNETLELQLKTLPKEPGVYRYYDEAGQLLYVGKAKNLKNRVLSYFNKSQVGYKTKIMVKKIHRLEVTIVPSEYDALLLEN
NLIKEHQPFYNIMMKDDKSFPWLCIKNEPFPRLFLTRKRIKDGSEYYGPYAKVKPARVLLETIKNLYKIRTCTLNLSEDR
IEKANYKVCLEYHIKNCEGPCEGLESEEDYEKKINAVRGIIKGDFRLAKAYLEEEMLKHASNLEFEKAQMVKEKLEFLED
YQVKHTVVNPSIDEVDVFGMVSDETTAYINYFKIRNGNIVQSYTSEFRKKLEESDEEILEEAVVAIRDKFQSESKEILLP
FHLGTEIPQVKLIVPKVGDKKRIVELSEKNAREYRLEKLKQIQIVDPDRHTNRIMAEMKTLLRLPEEPRHIEGFDNSNIQ
GTNPVSACVVFKDGKPSKKDYRIFHIKTVEGPNDFASMEEVIYRRYKRYLDEGEPLPQLILIDGGKGQLSSAVKSLKKLD
LYGKISIIGIAKRLEELFFPNDPIPLYLDKTSETLKVLQRVRDEAHRFGVKHHRTRRTNSTIKSELEEIPGVGAKSIELL
LSKLKSVKRIKEASQETLEEILGKSKGSIVWQYFNG

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=935547 PGK76_RS00235 WP_185148441.1 41460..43250(+) (uvrC) [Riemerella anatipestifer strain RCAD0866]
GTGAATGAGACTTTAGAACTTCAGCTAAAAACTTTACCAAAAGAACCTGGCGTTTACCGTTATTATGACGAAGCGGGGCA
ACTGCTCTATGTAGGGAAAGCTAAAAACCTTAAAAATAGGGTGCTATCTTACTTCAATAAAAGTCAAGTAGGTTATAAGA
CCAAAATTATGGTAAAAAAAATCCATCGTCTAGAGGTTACCATAGTTCCTAGTGAATACGACGCCCTCCTTTTAGAAAAC
AACCTCATCAAGGAACATCAGCCTTTCTACAATATTATGATGAAAGACGACAAAAGTTTCCCTTGGCTGTGCATCAAAAA
TGAACCTTTCCCTAGGCTATTTCTTACCAGAAAACGCATTAAAGATGGCTCCGAATATTATGGTCCTTACGCTAAAGTAA
AACCCGCTAGAGTACTTTTAGAAACCATTAAAAACCTCTATAAAATCAGGACTTGTACACTTAATCTTTCTGAAGATAGG
ATAGAGAAAGCCAATTATAAAGTCTGTTTAGAATACCACATTAAAAACTGCGAAGGTCCTTGCGAAGGTCTGGAAAGTGA
GGAAGATTACGAAAAGAAAATCAATGCTGTAAGAGGAATTATAAAAGGAGATTTCCGTTTGGCAAAAGCCTACTTAGAAG
AGGAGATGCTAAAACACGCCTCCAACCTAGAGTTTGAAAAAGCTCAAATGGTAAAGGAAAAATTGGAGTTTTTGGAAGAT
TATCAGGTTAAACACACTGTGGTTAATCCTAGTATAGATGAGGTAGATGTATTTGGTATGGTGAGTGATGAAACGACGGC
TTACATCAATTATTTTAAAATCAGAAATGGAAATATCGTTCAAAGTTATACTTCCGAATTCAGAAAAAAACTAGAAGAAA
GCGACGAAGAAATACTAGAAGAAGCTGTAGTTGCAATTAGAGATAAATTTCAGTCTGAATCTAAGGAAATATTACTACCA
TTCCATTTAGGCACCGAAATTCCTCAAGTGAAACTCATCGTTCCAAAGGTGGGCGACAAAAAGAGAATTGTAGAACTTTC
CGAAAAAAATGCGAGAGAATATCGTCTAGAAAAACTAAAGCAAATCCAAATTGTAGACCCTGACCGCCATACCAACCGCA
TTATGGCAGAAATGAAAACACTTCTTAGGCTTCCAGAAGAGCCAAGACACATTGAAGGCTTTGATAATTCTAATATTCAG
GGGACTAATCCCGTGTCTGCCTGTGTCGTCTTTAAAGATGGTAAACCAAGCAAGAAGGATTATCGTATTTTTCACATCAA
AACCGTAGAAGGTCCTAACGATTTCGCTTCTATGGAAGAAGTAATTTACCGAAGGTACAAAAGATATTTAGATGAAGGCG
AACCTCTACCCCAACTGATATTGATAGACGGCGGTAAGGGGCAACTGAGTTCTGCCGTTAAAAGTTTGAAAAAGTTAGAT
TTATATGGTAAAATCTCCATCATAGGTATTGCTAAAAGGTTAGAAGAGCTATTTTTCCCTAACGACCCCATTCCTTTATA
TTTAGACAAAACTTCGGAAACACTTAAAGTCTTACAAAGAGTGAGAGACGAAGCCCACCGTTTTGGAGTGAAGCACCACC
GCACCAGAAGAACCAACAGCACCATAAAATCAGAATTGGAAGAAATCCCAGGCGTTGGAGCTAAATCCATAGAGCTATTG
CTAAGTAAACTAAAATCAGTAAAGCGTATTAAAGAAGCCTCACAGGAAACCTTAGAGGAAATTTTAGGTAAGTCTAAAGG
CAGTATAGTATGGCAGTATTTTAATGGATAG

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(380-530)

GIY-YIG catalytic domain (GIY-YIG)

(16-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae R6

37.458

98.993

0.371
  uvrC Streptococcus pneumoniae D39

37.458

98.993

0.371
  uvrC Streptococcus pneumoniae TIGR4

37.288

98.993

0.369