Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   ACD268_RS08415 Genome accession   NZ_CP168299
Coordinates   1643583..1644632 (-) Length   349 a.a.
NCBI ID   WP_373381814.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain FC1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1638583..1649632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACD268_RS08385 (ACD268_08385) - 1638759..1640120 (+) 1362 WP_050238786.1 bacteriocin secretion accessory protein -
  ACD268_RS08390 (ACD268_08390) blpC 1640177..1640332 (+) 156 WP_000358814.1 quorum-sensing system pheromone BlpC -
  ACD268_RS08395 (ACD268_08395) - 1640377..1641717 (-) 1341 WP_050110752.1 sensor histidine kinase -
  ACD268_RS08400 (ACD268_08400) comE/blpR 1641731..1642468 (-) 738 WP_050110750.1 LytTR family DNA-binding domain-containing protein Regulator
  ACD268_RS08405 (ACD268_08405) - 1642473..1642811 (-) 339 WP_050110747.1 LytTR family DNA-binding domain-containing protein -
  ACD268_RS08410 (ACD268_08410) - 1643086..1643415 (+) 330 WP_000132575.1 hypothetical protein -
  ACD268_RS08415 (ACD268_08415) pptB 1643583..1644632 (-) 1050 WP_373381814.1 ABC transporter permease Regulator
  ACD268_RS08420 (ACD268_08420) pptA 1644629..1645360 (-) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  ACD268_RS08425 (ACD268_08425) - 1645428..1645838 (+) 411 WP_044814957.1 HIT family protein -
  ACD268_RS08430 (ACD268_08430) - 1645848..1646135 (+) 288 WP_000777753.1 hypothetical protein -
  ACD268_RS08435 (ACD268_08435) - 1646297..1646671 (+) 375 WP_373381815.1 hypothetical protein -
  ACD268_RS08440 (ACD268_08440) dnaJ 1646983..1648119 (-) 1137 WP_001066295.1 molecular chaperone DnaJ -
  ACD268_RS08445 (ACD268_08445) - 1648521..1648877 (-) 357 WP_000114429.1 hypothetical protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40596.68 Da        Isoelectric Point: 10.0008

>NTDB_id=935451 ACD268_RS08415 WP_373381814.1 1643583..1644632(-) (pptB) [Streptococcus pneumoniae strain FC1]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFRQKASKFFTETG
LDWDYLISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLPLLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=935451 ACD268_RS08415 WP_373381814.1 1643583..1644632(-) (pptB) [Streptococcus pneumoniae strain FC1]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATTCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCCTTGTTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTCGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGACTGGGACTATCTTATTTCTCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGTGTCAAGCGTCGTGCCTATCTGGACTTTATCTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTCTTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTACCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.714

100

0.479

  pptB Streptococcus thermophilus LMD-9

46.857

100

0.47