Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R8945_RS05685 Genome accession   NZ_AP028363
Coordinates   1097464..1098012 (+) Length   182 a.a.
NCBI ID   WP_002860190.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10617     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1092464..1103012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8945_RS05650 (B10617_11220) - 1092652..1093077 (+) 426 WP_002869469.1 GNAT family N-acetyltransferase -
  R8945_RS05655 (B10617_11230) - 1093141..1093761 (+) 621 WP_220525964.1 NAD(P)H-dependent oxidoreductase -
  R8945_RS05660 (B10617_11240) - 1093761..1094368 (+) 608 Protein_1094 NAD(P)H-dependent oxidoreductase -
  R8945_RS05665 (B10617_11250) pgsA 1094493..1095029 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  R8945_RS05670 (B10617_11260) rseP 1095026..1096132 (+) 1107 WP_002852927.1 RIP metalloprotease RseP -
  R8945_RS05675 (B10617_11270) - 1096125..1096991 (+) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  R8945_RS05680 (B10617_11280) rpsF 1097078..1097455 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  R8945_RS05685 (B10617_11290) ssb 1097464..1098012 (+) 549 WP_002860190.1 single-stranded DNA-binding protein Machinery gene
  R8945_RS05690 (B10617_11300) rpsR 1098023..1098283 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  R8945_RS05695 (B10617_11310) lon 1098343..1100718 (-) 2376 WP_002853487.1 endopeptidase La -
  R8945_RS05700 (B10617_11320) - 1100735..1101382 (-) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  R8945_RS05705 (B10617_11330) fliW 1101543..1101932 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  R8945_RS05710 (B10617_11340) proC 1101932..1102663 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  R8945_RS05715 (B10617_11350) ctsT 1102660..1102962 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20596.50 Da        Isoelectric Point: 5.0431

>NTDB_id=93540 R8945_RS05685 WP_002860190.1 1097464..1098012(+) (ssb) [Campylobacter jejuni strain BCH-10617]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=93540 R8945_RS05685 WP_002860190.1 1097464..1098012(+) (ssb) [Campylobacter jejuni strain BCH-10617]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39
  ssb Vibrio cholerae strain A1552

37.5

96.703

0.363

Multiple sequence alignment