Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ACD268_RS00540 Genome accession   NZ_CP168299
Coordinates   84395..85165 (+) Length   256 a.a.
NCBI ID   WP_000616167.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain FC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 79395..90165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACD268_RS00520 (ACD268_00520) - 81403..81840 (+) 438 WP_000076479.1 CoA-binding protein -
  ACD268_RS00525 (ACD268_00525) - 81881..82051 (+) 171 WP_050211817.1 hypothetical protein -
  ACD268_RS00530 (ACD268_00530) - 82070..83080 (-) 1011 WP_050079636.1 YeiH family protein -
  ACD268_RS00535 (ACD268_00535) - 83229..84398 (+) 1170 WP_373381845.1 pyridoxal phosphate-dependent aminotransferase -
  ACD268_RS00540 (ACD268_00540) recO 84395..85165 (+) 771 WP_000616167.1 DNA repair protein RecO Machinery gene
  ACD268_RS00545 (ACD268_00545) plsX 85162..86154 (+) 993 WP_330789310.1 phosphate acyltransferase PlsX -
  ACD268_RS00550 (ACD268_00550) - 86160..86393 (+) 234 WP_000136447.1 acyl carrier protein -
  ACD268_RS00555 (ACD268_00555) - 86430..86729 (+) 300 Protein_103 transposase family protein -
  ACD268_RS00560 (ACD268_00560) blpU 86932..87162 (+) 231 WP_001093075.1 bacteriocin-like peptide BlpU -
  ACD268_RS00565 (ACD268_00565) - 87165..87290 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  ACD268_RS00570 (ACD268_00570) - 87701..87895 (+) 195 WP_000756776.1 hypothetical protein -
  ACD268_RS00575 (ACD268_00575) comR 87916..88809 (+) 894 WP_000343890.1 XRE family transcriptional regulator Regulator
  ACD268_RS00580 (ACD268_00580) - 89339..89635 (+) 297 WP_000837726.1 uberolysin/carnocyclin family circular bacteriocin -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29788.29 Da        Isoelectric Point: 5.8959

>NTDB_id=935381 ACD268_RS00540 WP_000616167.1 84395..85165(+) (recO) [Streptococcus pneumoniae strain FC1]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQNLTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=935381 ACD268_RS00540 WP_000616167.1 84395..85165(+) (recO) [Streptococcus pneumoniae strain FC1]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAAATTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

98.828

100

0.988