Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinI   Type   Regulator
Locus tag   V5G23_RS16450 Genome accession   NZ_CP144925
Coordinates   3186451..3186627 (-) Length   58 a.a.
NCBI ID   WP_003183444.1    Uniprot ID   -
Organism   Bacillus licheniformis strain CP13     
Function   inhibit the expression of sinR (predicted from homology)   
Competence regulation

Genomic Context

Location: 3181451..3191627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G23_RS16405 (V5G23_16405) comGE 3181786..3182133 (+) 348 WP_009327907.1 competence type IV pilus minor pilin ComGE -
  V5G23_RS16410 (V5G23_16410) comGF 3182159..3182530 (+) 372 WP_003183461.1 competence type IV pilus minor pilin ComGF -
  V5G23_RS16415 (V5G23_16415) comGG 3182543..3182908 (+) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  V5G23_RS16420 (V5G23_16420) - 3182997..3183179 (+) 183 WP_003183456.1 YqzE family protein -
  V5G23_RS16425 (V5G23_16425) - 3183203..3183490 (-) 288 WP_223307118.1 YqzG/YhdC family protein -
  V5G23_RS16430 (V5G23_16430) tapA 3183800..3184528 (+) 729 WP_003183451.1 amyloid fiber anchoring/assembly protein TapA -
  V5G23_RS16435 (V5G23_16435) - 3184525..3185109 (+) 585 WP_003183449.1 signal peptidase I -
  V5G23_RS16440 (V5G23_16440) - 3185183..3185977 (+) 795 WP_003183447.1 TasA family protein -
  V5G23_RS16445 (V5G23_16445) sinR 3186082..3186417 (-) 336 WP_025804940.1 helix-turn-helix domain-containing protein Regulator
  V5G23_RS16450 (V5G23_16450) sinI 3186451..3186627 (-) 177 WP_003183444.1 anti-repressor SinI family protein Regulator
  V5G23_RS16455 (V5G23_16455) - 3186818..3187612 (-) 795 WP_003183441.1 YqhG family protein -
  V5G23_RS16460 (V5G23_16460) - 3187619..3189298 (-) 1680 WP_003183439.1 SNF2-related protein -
  V5G23_RS16465 (V5G23_16465) gcvT 3189891..3190985 (+) 1095 WP_003183436.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 58 a.a.        Molecular weight: 6724.47 Da        Isoelectric Point: 4.7616

>NTDB_id=935377 V5G23_RS16450 WP_003183444.1 3186451..3186627(-) (sinI) [Bacillus licheniformis strain CP13]
MNKDKNEKEELDEEWTDLIKHALEQGISPEEIRIFLNLGKKSSNPSTSIERSHSINPF

Nucleotide


Download         Length: 177 bp        

>NTDB_id=935377 V5G23_RS16450 WP_003183444.1 3186451..3186627(-) (sinI) [Bacillus licheniformis strain CP13]
ATGAATAAAGATAAAAATGAGAAAGAAGAATTGGATGAGGAGTGGACAGACTTGATTAAACACGCTCTTGAACAAGGCAT
TAGTCCAGAGGAAATACGTATTTTTCTCAATTTGGGAAAGAAGTCTTCAAATCCTTCCACATCAATTGAAAGAAGTCATT
CAATAAATCCTTTCTGA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(11-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinI Bacillus subtilis subsp. subtilis str. 168

51.724

100

0.517