Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   V5G23_RS16445 Genome accession   NZ_CP144925
Coordinates   3186082..3186417 (-) Length   111 a.a.
NCBI ID   WP_025804940.1    Uniprot ID   A0AB37GFT9
Organism   Bacillus licheniformis strain CP13     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3181082..3191417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G23_RS16400 (V5G23_16400) comGD 3181365..3181802 (+) 438 WP_009327905.1 competence type IV pilus minor pilin ComGD -
  V5G23_RS16405 (V5G23_16405) comGE 3181786..3182133 (+) 348 WP_009327907.1 competence type IV pilus minor pilin ComGE -
  V5G23_RS16410 (V5G23_16410) comGF 3182159..3182530 (+) 372 WP_003183461.1 competence type IV pilus minor pilin ComGF -
  V5G23_RS16415 (V5G23_16415) comGG 3182543..3182908 (+) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  V5G23_RS16420 (V5G23_16420) - 3182997..3183179 (+) 183 WP_003183456.1 YqzE family protein -
  V5G23_RS16425 (V5G23_16425) - 3183203..3183490 (-) 288 WP_223307118.1 YqzG/YhdC family protein -
  V5G23_RS16430 (V5G23_16430) tapA 3183800..3184528 (+) 729 WP_003183451.1 amyloid fiber anchoring/assembly protein TapA -
  V5G23_RS16435 (V5G23_16435) - 3184525..3185109 (+) 585 WP_003183449.1 signal peptidase I -
  V5G23_RS16440 (V5G23_16440) - 3185183..3185977 (+) 795 WP_003183447.1 TasA family protein -
  V5G23_RS16445 (V5G23_16445) sinR 3186082..3186417 (-) 336 WP_025804940.1 helix-turn-helix domain-containing protein Regulator
  V5G23_RS16450 (V5G23_16450) sinI 3186451..3186627 (-) 177 WP_003183444.1 anti-repressor SinI family protein Regulator
  V5G23_RS16455 (V5G23_16455) - 3186818..3187612 (-) 795 WP_003183441.1 YqhG family protein -
  V5G23_RS16460 (V5G23_16460) - 3187619..3189298 (-) 1680 WP_003183439.1 SNF2-related protein -
  V5G23_RS16465 (V5G23_16465) gcvT 3189891..3190985 (+) 1095 WP_003183436.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12991.60 Da        Isoelectric Point: 5.9495

>NTDB_id=935376 V5G23_RS16445 WP_025804940.1 3186082..3186417(-) (sinR) [Bacillus licheniformis strain CP13]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKRRQEKE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=935376 V5G23_RS16445 WP_025804940.1 3186082..3186417(-) (sinR) [Bacillus licheniformis strain CP13]
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCGATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAGAAG
ACAGGAAAAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928