Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   V5G23_RS12225 Genome accession   NZ_CP144925
Coordinates   2432168..2432308 (+) Length   46 a.a.
NCBI ID   WP_003184860.1    Uniprot ID   P69890
Organism   Bacillus licheniformis strain CP13     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2427168..2437308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G23_RS12200 (V5G23_12200) - 2427269..2427670 (+) 402 WP_003184870.1 YueI family protein -
  V5G23_RS12205 (V5G23_12205) - 2427855..2428406 (+) 552 WP_003184868.1 isochorismatase family cysteine hydrolase -
  V5G23_RS12210 (V5G23_12210) - 2428424..2429893 (+) 1470 WP_003184866.1 nicotinate phosphoribosyltransferase -
  V5G23_RS12215 (V5G23_12215) - 2430072..2431292 (+) 1221 WP_003184864.1 HDOD domain-containing protein -
  V5G23_RS12220 (V5G23_12220) - 2431335..2431673 (-) 339 WP_003184862.1 hypothetical protein -
  V5G23_RS12225 (V5G23_12225) degQ 2432168..2432308 (+) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  V5G23_RS12230 (V5G23_12230) - 2432497..2433366 (+) 870 WP_011198252.1 polyprenyl synthetase family protein -
  V5G23_RS12235 (V5G23_12235) comX 2433381..2433545 (+) 165 WP_011198251.1 competence pheromone ComX -
  V5G23_RS12240 (V5G23_12240) comP 2433585..2435906 (+) 2322 WP_026080865.1 ATP-binding protein Regulator
  V5G23_RS12245 (V5G23_12245) comA 2435993..2436631 (+) 639 WP_003184849.1 response regulator transcription factor Regulator
  V5G23_RS12250 (V5G23_12250) - 2436648..2437037 (+) 390 WP_003184847.1 hotdog fold thioesterase -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5747.56 Da        Isoelectric Point: 8.4596

>NTDB_id=935360 V5G23_RS12225 WP_003184860.1 2432168..2432308(+) (degQ) [Bacillus licheniformis strain CP13]
MEKQQIEELKQLLWRLENEIRETKDSLRKINKSIDQYDKYTYLKTS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=935360 V5G23_RS12225 WP_003184860.1 2432168..2432308(+) (degQ) [Bacillus licheniformis strain CP13]
GTGGAAAAGCAACAAATTGAAGAATTAAAACAACTGCTTTGGCGGCTAGAGAATGAAATCAGAGAAACAAAGGACTCCTT
GCGCAAGATTAACAAAAGCATTGATCAATACGATAAGTACACATATTTAAAAACCTCGTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P69890

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

71.429

91.304

0.652