Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   V5G22_RS05580 Genome accession   NZ_CP144920
Coordinates   1123590..1124036 (+) Length   148 a.a.
NCBI ID   WP_009330244.1    Uniprot ID   -
Organism   Bacillus licheniformis strain CP26     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1118590..1129036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G22_RS05560 (V5G22_05560) - 1119752..1120492 (+) 741 WP_003178817.1 LXG domain-containing protein -
  V5G22_RS05565 (V5G22_05565) - 1120683..1122292 (+) 1610 Protein_1077 methyl-accepting chemotaxis protein -
  V5G22_RS05570 (V5G22_05570) - 1122312..1123115 (-) 804 WP_009330243.1 protein kinase -
  V5G22_RS05575 (V5G22_05575) - 1123121..1123324 (-) 204 WP_003178812.1 hypothetical protein -
  V5G22_RS05580 (V5G22_05580) nucA/comI 1123590..1124036 (+) 447 WP_009330244.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  V5G22_RS05585 (V5G22_05585) nin/comJ 1124054..1124452 (+) 399 WP_003178808.1 competence protein ComJ Regulator
  V5G22_RS05590 (V5G22_05590) - 1124491..1125927 (-) 1437 WP_003178806.1 family 1 glycosylhydrolase -
  V5G22_RS05595 (V5G22_05595) - 1125997..1126722 (-) 726 WP_003178804.1 AAA family ATPase -
  V5G22_RS05600 (V5G22_05600) - 1126819..1127370 (-) 552 WP_003178803.1 NAD(P)H-dependent oxidoreductase -
  V5G22_RS05605 (V5G22_05605) - 1127554..1128429 (+) 876 WP_003178801.1 transporter substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16180.11 Da        Isoelectric Point: 5.2521

>NTDB_id=935182 V5G22_RS05580 WP_009330244.1 1123590..1124036(+) (nucA/comI) [Bacillus licheniformis strain CP26]
MDKIKSLLITLLAVAVVIIGIVSGDFFTSEHQPSGRQNGSNYDEVLIFPSDRYPETGAHIRKAIKKGHSEICTIDRDGAA
ERRKDSLKDVPSKSGYDRDEWPMAMCEEGGTGASVEYISPSDNRGAGSWVGNQVSDYPDGTKVLFKIN

Nucleotide


Download         Length: 447 bp        

>NTDB_id=935182 V5G22_RS05580 WP_009330244.1 1123590..1124036(+) (nucA/comI) [Bacillus licheniformis strain CP26]
ATGGACAAGATTAAATCTTTGCTGATCACCTTGCTCGCCGTCGCCGTCGTGATCATCGGTATTGTATCTGGCGACTTTTT
CACTTCAGAACACCAGCCTTCGGGCCGGCAAAACGGCTCAAACTACGATGAAGTGCTGATTTTTCCTTCGGACCGCTATC
CTGAAACAGGCGCACACATTCGAAAGGCTATCAAAAAAGGGCACTCCGAAATCTGTACGATCGACAGGGACGGAGCCGCC
GAACGCCGAAAGGATTCATTGAAAGATGTTCCTTCCAAATCAGGCTATGACCGCGACGAGTGGCCGATGGCCATGTGCGA
AGAAGGCGGAACAGGTGCTTCTGTCGAGTATATCAGCCCGTCTGATAACCGTGGAGCAGGATCTTGGGTGGGCAATCAGG
TAAGCGATTATCCGGACGGGACGAAAGTACTTTTCAAGATTAATTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

64.626

99.324

0.642