Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R8617_RS05530 Genome accession   NZ_AP028362
Coordinates   1060896..1061444 (+) Length   182 a.a.
NCBI ID   WP_002860190.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10611     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1055896..1066444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8617_RS05500 (B10611_10830) - 1056710..1057135 (+) 426 WP_002777060.1 GNAT family N-acetyltransferase -
  R8617_RS05505 (B10611_10840) - 1057199..1057801 (+) 603 WP_317652519.1 NAD(P)H-dependent oxidoreductase -
  R8617_RS05510 (B10611_10850) pgsA 1057927..1058463 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  R8617_RS05515 (B10611_10860) rseP 1058460..1059566 (+) 1107 WP_002867184.1 RIP metalloprotease RseP -
  R8617_RS05520 (B10611_10870) - 1059559..1060425 (+) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  R8617_RS05525 (B10611_10880) rpsF 1060510..1060887 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  R8617_RS05530 (B10611_10890) ssb 1060896..1061444 (+) 549 WP_002860190.1 single-stranded DNA-binding protein Machinery gene
  R8617_RS05535 (B10611_10900) rpsR 1061455..1061715 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  R8617_RS05540 (B10611_10910) lon 1061775..1064150 (-) 2376 WP_317652522.1 endopeptidase La -
  R8617_RS05545 (B10611_10920) - 1064167..1064814 (-) 648 WP_011049880.1 outer membrane protein assembly factor BamD -
  R8617_RS05550 (B10611_10930) fliW 1064975..1065364 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  R8617_RS05555 (B10611_10940) proC 1065364..1066095 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  R8617_RS05560 (B10611_10950) ctsT 1066092..1066394 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20596.50 Da        Isoelectric Point: 5.0431

>NTDB_id=93494 R8617_RS05530 WP_002860190.1 1060896..1061444(+) (ssb) [Campylobacter jejuni strain BCH-10611]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=93494 R8617_RS05530 WP_002860190.1 1060896..1061444(+) (ssb) [Campylobacter jejuni strain BCH-10611]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39
  ssb Vibrio cholerae strain A1552

37.5

96.703

0.363

Multiple sequence alignment