Detailed information NTG0934877

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: V4Y05_RS27685
• Genome accession: NZ_CP144767
• Coordinates: 6101886..6103214 (+)
• Length: 442 a.a.
• NCBI ID: WP_053262729.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. chlororaphis strain ATCC 9446
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6096886..6108214

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V4Y05_RS27665 (V4Y05_27665)	pgeF	6098377..6099102 (-)	726	WP_053262726.1	peptidoglycan editing factor PgeF	-
V4Y05_RS27670 (V4Y05_27670)	rluD	6099099..6100061 (-)	963	WP_007924719.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
V4Y05_RS27675 (V4Y05_27675)	-	6100214..6101236 (+)	1023	WP_053262727.1	outer membrane protein assembly factor BamD	-
V4Y05_RS27680 (V4Y05_27680)	-	6101371..6101604 (+)	234	WP_053262728.1	PP0621 family protein	-
V4Y05_RS27685 (V4Y05_27685)	pilR	6101886..6103214 (+)	1329	WP_053262729.1	sigma-54 dependent transcriptional regulator	Regulator
V4Y05_RS27690 (V4Y05_27690)	thiO	6103211..6104311 (-)	1101	WP_053262730.1	glycine oxidase ThiO	-
V4Y05_RS27695 (V4Y05_27695)	-	6104366..6104767 (-)	402	WP_007924724.1	type IV pilin protein	-
V4Y05_RS27700 (V4Y05_27700)	-	6104781..6107849 (-)	3069	WP_053262731.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48772.32 Da
• Isoelectric Point: 9.4419

>NTDB_id=934877 V4Y05_RS27685 WP_053262729.1 6101886..6103214(+) (pilR) [Pseudomonas chlororaphis subsp. chlororaphis strain ATCC 9446]
MSPRQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQCRQLRMPLA
ILSTCARQETAIHALKAGAIDFLSKPVALARLRELLNGALPGSTPPPPASGPLLGDSAAMHKLRGQIGKLARSQASVYIS
GESGSGKELVARAIHDQGPRASHAFVPVNCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKALQAEVHAGRFRQDLYYRLNVIELPVPPLRARKADIEPLATAILE
RLAQGNGQQLARLQPSALLALQGYDFPGNVRELENLLERAHTLCENRRIEARDLRLTPNGAHPAITPGLAQVINLEKHLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=934877 V4Y05_RS27685 WP_053262729.1 6101886..6103214(+) (pilR) [Pseudomonas chlororaphis subsp. chlororaphis strain ATCC 9446]
ATGAGCCCACGACAAAAAGTCTTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAACGCCATACCCGCAGCGCCCGCACCCTGGGCGAAGCGCGTCACTGGCTGGCCCGGGAAGGCTTCGACCTGTGCCTGA
GCGACCTGCATTTACCCGACGGCACGGGGCTGGAATTACTCGAGCATATCCAGTGCCGCCAGCTGCGAATGCCGCTGGCA
ATACTCAGCACCTGCGCCCGCCAGGAAACCGCGATCCACGCCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCGCGCTTGCGCGAACTGCTGAATGGTGCCCTGCCCGGATCGACACCCCCGCCCCCTGCTAGCGGTCCATTGC
TCGGCGATTCAGCCGCCATGCACAAGCTGCGCGGACAAATCGGCAAACTGGCCCGGAGCCAGGCCTCGGTCTATATCAGC
GGAGAGTCCGGAAGCGGCAAGGAACTGGTCGCCCGCGCGATCCACGACCAGGGTCCTCGAGCCAGCCACGCCTTCGTGCC
GGTCAATTGCGGAGCCATCCCACCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCTA
TCGAAGACAAGCCCGGCCTGTTCCAGGCGGCGCACGGCGGCACGCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAAGTCAAATTGCTCCGCGCGCTGCAGGAGAAGGCGGTGCGGTGCGTCGGTGGGCAGCAGGAGGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACTCACAAGGCGCTGCAGGCGGAAGTGCATGCCGGACGCTTTCGCCAGGATCTCTACTATCGCC
TGAACGTGATCGAGCTGCCGGTACCACCGCTACGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACCGCCATCCTCGAG
CGCCTGGCGCAGGGTAACGGCCAACAACTGGCACGGCTTCAGCCAAGCGCGCTGCTGGCGCTCCAGGGCTACGACTTTCC
CGGTAACGTGCGCGAACTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCGGATCGAAGCACGCGACC
TGCGCCTGACGCCCAACGGCGCCCACCCGGCCATCACGCCCGGCCTGGCACAGGTGATCAACCTTGAGAAACATCTGCAA
GAAGTCGAGCGCCGACTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGCTCGATGCGCTACCGGCTGAAGAAGCTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	68.172	100	0.683
pilR	Acinetobacter baumannii strain A118	44.009	100	0.457