Detailed information NTG0934812

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: V3H56_RS23200
• Genome accession: NZ_CP144763
• Coordinates: 5258208..5259554 (+)
• Length: 448 a.a.
• NCBI ID: WP_047736282.1
• Uniprot ID: -
• Organism: Pseudomonas sp. MS646
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5253208..5264554

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V3H56_RS23175 (V3H56_23175)	pgeF	5253420..5254145 (-)	726	WP_047736280.1	peptidoglycan editing factor PgeF	-
V3H56_RS23180 (V3H56_23180)	rluD	5254142..5255104 (-)	963	WP_042730708.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
V3H56_RS23185 (V3H56_23185)	-	5255256..5256272 (+)	1017	WP_042730707.1	outer membrane protein assembly factor BamD	-
V3H56_RS23190 (V3H56_23190)	-	5256399..5256632 (+)	234	WP_042730706.1	PP0621 family protein	-
V3H56_RS23195 (V3H56_23195)	pilS	5256622..5258211 (+)	1590	WP_047736281.1	ATP-binding protein	Regulator
V3H56_RS23200 (V3H56_23200)	pilR	5258208..5259554 (+)	1347	WP_047736282.1	sigma-54 dependent transcriptional regulator	Regulator
V3H56_RS23205 (V3H56_23205)	thiO	5260203..5261303 (-)	1101	WP_042730703.1	glycine oxidase ThiO	-
V3H56_RS23210 (V3H56_23210)	-	5261361..5261762 (-)	402	WP_042730702.1	type IV pilin protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50184.57 Da
• Isoelectric Point: 5.7470

>NTDB_id=934812 V3H56_RS23200 WP_047736282.1 5258208..5259554(+) (pilR) [Pseudomonas sp. MS646]
MNTRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQALLADEAFDLCLTDMRLPDGTGLELVQHIQQRYIQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLTRLRELVASALRLPPVAAPGTTIERCLLGESPPMRNVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRSNLGFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIEPLA
NHMLQRLAANTASPAVKLHPQALEALRNYRFPGNVRELENMLERAYTLCEHQQIEADDLRLADSNNANDATSADLVQVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=934812 V3H56_RS23200 WP_047736282.1 5258208..5259554(+) (pilR) [Pseudomonas sp. MS646]
TTGAATACACGCTCACGGCAACGAATCCTGATCGTCGACGACGAACCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTTGCCGAGGCCCAAGCCCTGTTGGCGGACGAGGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAACACATCCAGCAACGCTACATCCAGCTGCCC
GTGGCGATGATCACCGCCTACGGCAGCCTGGAAACCGCCATCGATGCCCTCAAGGCCGGGGCCTTCGACTTCCTGACCAA
GCCGGTCGACCTGACCCGGTTGCGTGAACTGGTCGCCAGCGCCCTGCGCCTGCCACCGGTTGCCGCCCCCGGCACAACCA
TCGAGCGCTGCCTGCTGGGCGAATCACCGCCCATGCGCAACGTGCGCAAACAGATCGAAAAACTCGCCCGCAGCCAGGCG
CCGGTGTACATCAGCGGCGAGTCGGGCTGTGGCAAGGAGTTGGTGGCCCGGCTGATCCACGAACAAGGTCCCCGTTCCAA
TCTCGGCTTTGTGCCGGTCAACTGTGGAGCAATTCCCACGGAGCTGATGGAAAGCGAGTTTTTCGGCCACCGCAAAGGCA
GTTTCAGCGGCGCCATCGAAGACAAACCCGGGCTGTTCCAGGCCGCCCATGGCGGCACGCTGTTCCTCGACGAGGTGGCT
GACCTGCCCCTGGCCATGCAAGTCAAACTGCTGCGGGCCATCCAGGAAAAAGCCGTGCGCGCCGTCGGCGGCCAACAGGA
AGAAGTGGTGGACGTACGCATCCTTTGCGCCACCCACAAGGACCTGGACGCCGAAGTCGCCGCCGGGCGTTTTCGCCAGG
ACCTGTACTATCGGCTGAACGTCATCGAACTGCGCGTCCCGCCCCTGCGCGAACGCCGCGAAGACATCGAGCCCCTGGCC
AACCACATGCTCCAACGCCTGGCGGCCAACACCGCCAGCCCTGCCGTCAAACTCCACCCCCAGGCCCTGGAGGCCCTTCG
CAACTACCGTTTCCCAGGAAACGTGCGGGAGCTGGAGAACATGCTCGAACGGGCCTACACCCTTTGCGAGCACCAACAGA
TCGAAGCCGACGACCTGCGCCTGGCCGACAGCAATAATGCCAACGACGCCACCAGCGCCGACCTGGTGCAGGTCGACAAC
CTGGAAGACTACCTGGAAGACGTCGAACGCAAACTCATCCTCCAGGCCCTGGAAGAAACCCGCTGGAACCGCACGGCGGC
GGCCCAGCGGTTGAAACTGTCGTTTCGTTCGATGCGGTATCGGTTGAAGAAGCTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Sigma-54 interaction domain (Sigma54_activat) (138-304)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.505	99.107	0.788
pilR	Acinetobacter baumannii strain A118	49.891	100	0.511