Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   V3H56_RS19240 Genome accession   NZ_CP144763
Coordinates   4404741..4406987 (-) Length   748 a.a.
NCBI ID   WP_338473766.1    Uniprot ID   -
Organism   Pseudomonas sp. MS646     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4399741..4411987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3H56_RS19205 (V3H56_19205) murB 4400123..4401142 (-) 1020 WP_123578341.1 UDP-N-acetylmuramate dehydrogenase -
  V3H56_RS19210 (V3H56_19210) - 4401139..4401603 (-) 465 WP_338473764.1 low molecular weight protein-tyrosine-phosphatase -
  V3H56_RS19215 (V3H56_19215) kdsB 4401603..4402367 (-) 765 WP_042728812.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V3H56_RS19220 (V3H56_19220) - 4402364..4402549 (-) 186 WP_042728811.1 Trm112 family protein -
  V3H56_RS19225 (V3H56_19225) lpxK 4402575..4403585 (-) 1011 WP_047736433.1 tetraacyldisaccharide 4'-kinase -
  V3H56_RS19230 (V3H56_19230) - 4403585..4404013 (-) 429 WP_338473765.1 biopolymer transporter ExbD -
  V3H56_RS19235 (V3H56_19235) exbB 4404010..4404645 (-) 636 WP_161796100.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V3H56_RS19240 (V3H56_19240) comA 4404741..4406987 (-) 2247 WP_338473766.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V3H56_RS19245 (V3H56_19245) - 4407132..4407647 (+) 516 WP_042728806.1 DUF2062 domain-containing protein -
  V3H56_RS19250 (V3H56_19250) - 4407782..4408561 (-) 780 WP_042728805.1 ABC transporter permease -
  V3H56_RS19255 (V3H56_19255) - 4408558..4409490 (-) 933 WP_042728804.1 ABC transporter ATP-binding protein -
  V3H56_RS19260 (V3H56_19260) - 4409623..4410246 (-) 624 WP_042728803.1 glutathione S-transferase -
  V3H56_RS19265 (V3H56_19265) - 4410293..4410952 (-) 660 WP_042728802.1 transglutaminase family protein -

Sequence

Protein


Download         Length: 748 a.a.        Molecular weight: 81020.98 Da        Isoelectric Point: 10.1158

>NTDB_id=934805 V3H56_RS19240 WP_338473766.1 4404741..4406987(-) (comA) [Pseudomonas sp. MS646]
MRTGLVALALGLVAPVFFPALPPPWLMVALPVLALMAVPFRTYPLGFFLGGLAWACLSAQCALDDRLPAALEGETRWVEG
RVVGLPQYSDGVVRFELADAHGRRDRLPALMRLAWFGGPPVSSGERWRLAVKLKRPAGLLNPHGFDYQAWLLSRGIGATG
TIKDGRLLQPAQGAWRDGVRQALARVDAQGRSGALMALVLGDGAGLSREDWRALQDTGTVHLLVISGQHIGLLAGLVYLM
VAGAARHGLWPARLPWLPWACGLAFMAALGYGLLAGFEVPVRRACAMIGLVLLWRLRFKPAASWWAWLLAFDGVLLFDPL
ACLRPGFWLSFAAVAILMFTFGGRLGPWRWWQTWTRAQWLVALGLCPLLLILGLPVSLSGPLANLLAVPWISLLVLPPAL
LGTLLLPVPFVGEGLLWIAGGLLDVWFRGLAWVAGQLPAWTPAAVPPWALGIAALGAFVLLLPKGVPLRLLGWPMLSLMV
FAPRENLPHGQAEIWQLDVGQGLAVLVRTHGHALLYDAGPRWGDADAGERVVLPTLRKLGVRELDLMLLSHADADHAGGA
LAVRNGLPTRQLISGDPDALPEALHAGPCDSGQRWEWDGVGFALWQWSSAEDSNQKSCVLRVEAGGERLLLTGDIDRHAE
RALLDGPLAVPIHWLAAPHHGSRSSSSMALLARLKPHSVLISRGQGNAFGHPHPQVMARYRRAGMTIYDSAEQGAIRLQL
GAFARPRTEAGHRRYWRDPLPAGPPGRH

Nucleotide


Download         Length: 2247 bp        

>NTDB_id=934805 V3H56_RS19240 WP_338473766.1 4404741..4406987(-) (comA) [Pseudomonas sp. MS646]
ATGCGCACAGGATTGGTCGCGCTTGCGCTGGGGCTGGTGGCCCCGGTTTTTTTCCCGGCGTTGCCGCCGCCGTGGCTGAT
GGTGGCGCTGCCGGTGCTGGCACTGATGGCCGTGCCGTTTCGAACCTACCCGCTGGGCTTCTTCCTGGGCGGATTGGCCT
GGGCCTGTCTGTCGGCGCAGTGTGCGCTGGACGATCGGTTGCCTGCCGCGCTGGAGGGAGAAACCCGTTGGGTCGAAGGG
CGTGTCGTCGGCTTGCCGCAATACAGCGACGGCGTGGTGCGCTTCGAACTGGCCGATGCCCATGGTCGTCGCGACCGGTT
GCCGGCGTTGATGCGCCTCGCCTGGTTCGGTGGGCCGCCGGTCAGCAGTGGCGAGCGTTGGCGATTGGCGGTCAAGCTCA
AGCGGCCCGCCGGGCTGCTGAACCCTCACGGTTTCGACTATCAGGCCTGGCTGTTGAGCCGGGGCATCGGCGCCACCGGA
ACCATCAAGGACGGTCGCCTGCTGCAGCCGGCTCAGGGCGCTTGGCGTGACGGGGTGCGCCAGGCGCTGGCGCGGGTCGA
TGCCCAGGGCCGCTCCGGTGCGCTGATGGCCTTGGTGCTGGGGGATGGTGCCGGGTTGAGCCGCGAAGACTGGCGGGCGT
TGCAAGACACCGGCACGGTTCATCTGCTGGTGATCTCCGGGCAACATATTGGCCTGCTCGCCGGCCTGGTGTACCTGATG
GTGGCGGGTGCGGCGCGCCATGGCTTGTGGCCGGCAAGGCTGCCATGGTTGCCCTGGGCCTGCGGCCTGGCCTTCATGGC
GGCGCTGGGCTACGGCTTGCTGGCTGGGTTCGAGGTGCCGGTGCGGCGGGCCTGCGCGATGATCGGCCTGGTGTTGCTGT
GGCGCTTGCGCTTCAAGCCTGCGGCCTCCTGGTGGGCCTGGTTGCTGGCGTTCGACGGGGTGCTGTTGTTCGATCCGCTG
GCCTGCCTGCGGCCCGGATTCTGGCTGTCGTTCGCCGCCGTCGCGATCCTGATGTTCACCTTTGGCGGCCGCCTGGGGCC
CTGGCGCTGGTGGCAGACCTGGACTCGCGCCCAATGGCTGGTTGCGCTCGGCCTGTGTCCGTTGCTGTTGATCCTGGGGT
TGCCGGTGAGCCTCAGCGGGCCGCTGGCGAACCTGCTGGCGGTGCCCTGGATCAGCCTGCTGGTGCTGCCGCCGGCATTG
CTCGGCACGCTGTTGTTGCCGGTGCCGTTCGTGGGCGAGGGCCTGCTATGGATCGCCGGTGGGCTGCTCGACGTGTGGTT
CAGGGGGCTGGCGTGGGTGGCCGGGCAACTGCCCGCCTGGACCCCGGCGGCGGTTCCGCCGTGGGCCTTGGGCATCGCCG
CCCTCGGTGCGTTTGTGCTGCTGTTGCCCAAGGGCGTGCCGCTGCGTCTTTTGGGTTGGCCAATGTTGAGCTTGATGGTC
TTTGCACCGCGGGAAAACCTGCCGCACGGGCAGGCCGAAATCTGGCAACTGGACGTGGGCCAGGGGCTGGCGGTGCTGGT
GCGTACCCATGGCCATGCCTTGCTTTATGACGCCGGGCCACGCTGGGGCGACGCCGATGCGGGCGAGCGTGTCGTGCTGC
CCACCTTGCGCAAGCTGGGGGTGCGCGAATTGGACCTGATGCTGCTCAGCCATGCCGATGCCGATCATGCCGGTGGTGCC
CTGGCGGTGCGCAACGGGCTGCCCACCCGGCAGCTGATCAGCGGCGATCCCGACGCGCTGCCCGAGGCGTTGCACGCCGG
GCCTTGTGACAGTGGCCAGCGCTGGGAGTGGGACGGGGTCGGTTTCGCGCTGTGGCAATGGTCATCGGCCGAGGACAGCA
ACCAGAAGTCCTGCGTGTTGCGGGTGGAGGCGGGCGGCGAGCGCTTGCTGTTGACCGGCGACATCGACCGACATGCCGAG
CGCGCCTTGCTCGATGGCCCCCTGGCGGTGCCGATCCACTGGCTGGCCGCCCCTCATCATGGCAGCCGCAGCTCATCGTC
GATGGCGCTGCTGGCACGTCTCAAGCCTCACTCGGTGCTGATTTCCCGCGGACAGGGCAATGCCTTCGGCCATCCACATC
CCCAGGTGATGGCCCGTTACCGCCGGGCGGGGATGACGATCTACGACAGCGCCGAACAGGGTGCCATTCGTCTGCAACTG
GGGGCCTTCGCCCGGCCGCGTACCGAGGCCGGGCATCGCCGCTACTGGCGTGATCCACTGCCCGCCGGCCCCCCGGGCCG
ACATTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(21-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-675)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.592

95.722

0.59