Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   V3H56_RS19235 Genome accession   NZ_CP144763
Coordinates   4404010..4404645 (-) Length   211 a.a.
NCBI ID   WP_161796100.1    Uniprot ID   -
Organism   Pseudomonas sp. MS646     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4399010..4409645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3H56_RS19200 (V3H56_19200) - 4399387..4399857 (-) 471 WP_042728815.1 (2Fe-2S)-binding protein -
  V3H56_RS19205 (V3H56_19205) murB 4400123..4401142 (-) 1020 WP_123578341.1 UDP-N-acetylmuramate dehydrogenase -
  V3H56_RS19210 (V3H56_19210) - 4401139..4401603 (-) 465 WP_338473764.1 low molecular weight protein-tyrosine-phosphatase -
  V3H56_RS19215 (V3H56_19215) kdsB 4401603..4402367 (-) 765 WP_042728812.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V3H56_RS19220 (V3H56_19220) - 4402364..4402549 (-) 186 WP_042728811.1 Trm112 family protein -
  V3H56_RS19225 (V3H56_19225) lpxK 4402575..4403585 (-) 1011 WP_047736433.1 tetraacyldisaccharide 4'-kinase -
  V3H56_RS19230 (V3H56_19230) - 4403585..4404013 (-) 429 WP_338473765.1 biopolymer transporter ExbD -
  V3H56_RS19235 (V3H56_19235) exbB 4404010..4404645 (-) 636 WP_161796100.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V3H56_RS19240 (V3H56_19240) comA 4404741..4406987 (-) 2247 WP_338473766.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V3H56_RS19245 (V3H56_19245) - 4407132..4407647 (+) 516 WP_042728806.1 DUF2062 domain-containing protein -
  V3H56_RS19250 (V3H56_19250) - 4407782..4408561 (-) 780 WP_042728805.1 ABC transporter permease -
  V3H56_RS19255 (V3H56_19255) - 4408558..4409490 (-) 933 WP_042728804.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22884.98 Da        Isoelectric Point: 7.3613

>NTDB_id=934804 V3H56_RS19235 WP_161796100.1 4404010..4404645(-) (exbB) [Pseudomonas sp. MS646]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGDKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=934804 V3H56_RS19235 WP_161796100.1 4404010..4404645(-) (exbB) [Pseudomonas sp. MS646]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGTGTGACCCCGGAGCATCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTGAACAAGGACAAGCTCAAGGAACTGCGCGCCAGTTCGCCCCTGGGGGAAATCCTCGCCGCCGGCCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATCCATGAGCTGGAGCGCTACAT
CAATGCCCTGGGCACCATTGCCGCCATGTCTCCGTTGCTGGGCCTGCTGGGTACGGTGCTGGGCATGATCGATATCTTCA
GCGCCTTCACCGGCTCCGGCATGACCACCAACGCCGCCGTGCTGGCGGGGGGCATCTCCAAGGCGCTGATCACCACTGCT
GCCGGCCTGATGGTGGGTATCCCGTCAGTGTTTTTCCATCGCTTCCTGCAACGGCGCGTCGACGAGCTCGTGGTGGGCAT
GGAGCAGGAGGCCATCAAGCTGGTCGAGGTGGTGCAGGGTGACCGTGATGTAGACCTGGCCGGGGACAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.238

99.526

0.848