Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V3C97_RS00135 Genome accession   NZ_CP144759
Coordinates   28543..29130 (+) Length   195 a.a.
NCBI ID   WP_216543285.1    Uniprot ID   -
Organism   Ligilactobacillus saerimneri strain M-11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 23543..34130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3C97_RS00105 (V3C97_00105) - 23640..24728 (+) 1089 WP_338434214.1 DUF4767 domain-containing protein -
  V3C97_RS00110 (V3C97_00110) - 24847..25425 (-) 579 WP_268889158.1 HD domain-containing protein -
  V3C97_RS00115 (V3C97_00115) - 25562..26515 (+) 954 WP_338434215.1 AEC family transporter -
  V3C97_RS00120 (V3C97_00120) - 26963..27673 (+) 711 WP_338434216.1 AzlC family ABC transporter permease -
  V3C97_RS00125 (V3C97_00125) - 27670..28002 (+) 333 WP_283598430.1 AzlD domain-containing protein -
  V3C97_RS00130 (V3C97_00130) rpsF 28220..28507 (+) 288 WP_009552686.1 30S ribosomal protein S6 -
  V3C97_RS00135 (V3C97_00135) ssb 28543..29130 (+) 588 WP_216543285.1 single-stranded DNA-binding protein Machinery gene
  V3C97_RS00140 (V3C97_00140) rpsR 29148..29384 (+) 237 WP_338434217.1 30S ribosomal protein S18 -
  V3C97_RS00145 (V3C97_00145) - 29549..29752 (+) 204 WP_009552691.1 helix-turn-helix transcriptional regulator -
  V3C97_RS00150 (V3C97_00150) - 29749..30288 (+) 540 WP_338434218.1 DUF3278 domain-containing protein -
  V3C97_RS00155 (V3C97_00155) - 30364..31230 (-) 867 WP_268889165.1 aldo/keto reductase -
  V3C97_RS00160 (V3C97_00160) - 31412..31846 (+) 435 WP_338434219.1 hypothetical protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21219.96 Da        Isoelectric Point: 4.9400

>NTDB_id=934772 V3C97_RS00135 WP_216543285.1 28543..29130(+) (ssb) [Ligilactobacillus saerimneri strain M-11]
MINRVVITGRLTRDAELRYTQSGVAVASFTVAVDRQFRTQAGEREADFINCVIWRKSAENFVNFTHKGSMVGIDGRLQTR
NYENQQGQRVYVTEVVVDSFALMESRSQSEQYRQTHGGNGMGQGGAPNNGFTSGNNGYAGGNNTPAGGYSNPSQGYSNNA
APMSGNTGNQNQDLNQDPFSDDQNGKVISDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=934772 V3C97_RS00135 WP_216543285.1 28543..29130(+) (ssb) [Ligilactobacillus saerimneri strain M-11]
TTGATCAATAGAGTCGTTATTACAGGTCGTTTGACCCGGGACGCAGAATTGCGTTATACCCAAAGTGGAGTAGCGGTGGC
AAGTTTTACGGTGGCAGTTGATCGGCAATTCCGGACCCAAGCAGGGGAACGGGAAGCTGATTTCATTAATTGCGTAATTT
GGCGGAAGTCAGCCGAAAACTTTGTCAACTTTACCCATAAAGGTTCAATGGTGGGAATCGATGGGCGGTTGCAAACGAGA
AACTACGAAAACCAACAAGGTCAACGGGTTTACGTGACTGAAGTGGTGGTAGATTCCTTTGCCCTGATGGAAAGTCGTTC
CCAATCGGAACAGTACCGACAAACACATGGTGGTAACGGCATGGGTCAAGGTGGTGCTCCAAATAACGGTTTCACATCCG
GAAATAACGGATATGCTGGGGGAAATAATACTCCAGCCGGTGGTTATAGCAACCCGAGCCAGGGTTACTCCAACAATGCC
GCTCCGATGTCGGGGAACACTGGTAATCAAAACCAAGATCTTAACCAAGATCCATTTAGTGATGACCAGAACGGCAAAGT
TATTTCTGATGATGACCTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

55.385

100

0.554
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.251

100

0.513