Detailed information NTG0934761

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: V5F23_RS23825
• Genome accession: NZ_CP144758
• Coordinates: 5355190..5356536 (+)
• Length: 448 a.a.
• NCBI ID: WP_212803044.1
• Uniprot ID: -
• Organism: Pseudomonas sp. WP18
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5350190..5361536

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V5F23_RS23800 (V5F23_23800)	pgeF	5350402..5351127 (-)	726	WP_047736280.1	peptidoglycan editing factor PgeF	-
V5F23_RS23805 (V5F23_23805)	rluD	5351124..5352086 (-)	963	WP_042730708.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
V5F23_RS23810 (V5F23_23810)	-	5352238..5353254 (+)	1017	WP_042730707.1	outer membrane protein assembly factor BamD	-
V5F23_RS23815 (V5F23_23815)	-	5353381..5353614 (+)	234	WP_042730706.1	PP0621 family protein	-
V5F23_RS23820 (V5F23_23820)	pilS	5353604..5355193 (+)	1590	WP_047736281.1	ATP-binding protein	Regulator
V5F23_RS23825 (V5F23_23825)	pilR	5355190..5356536 (+)	1347	WP_212803044.1	sigma-54 dependent transcriptional regulator	Regulator
V5F23_RS23830 (V5F23_23830)	thiO	5357185..5358285 (-)	1101	WP_338496779.1	glycine oxidase ThiO	-
V5F23_RS23835 (V5F23_23835)	-	5358343..5358744 (-)	402	WP_042730702.1	type IV pilin protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50187.57 Da
• Isoelectric Point: 5.7470

>NTDB_id=934761 V5F23_RS23825 WP_212803044.1 5355190..5356536(+) (pilR) [Pseudomonas sp. WP18]
MNTRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQALLADEAFDLCLTDMRLPDGTGLELVQHIQQRYIQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLTRLRELVASALRLPPVAAPGTTIERCLLGESPPMRNVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRSNLGFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIEPLA
NHMLQRLSANTASPAVKLHPQALEALRNYRFPGNVRELENMLERAYTLCEHQQIEADDLRLADSNNATDATSADLVQVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=934761 V5F23_RS23825 WP_212803044.1 5355190..5356536(+) (pilR) [Pseudomonas sp. WP18]
TTGAATACACGCTCACGGCAACGAATCCTGATCGTCGACGACGAACCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTTGCCGAGGCCCAAGCCCTGTTGGCGGACGAGGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAACACATCCAGCAACGCTACATCCAACTGCCC
GTGGCGATGATCACCGCCTACGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGGGCCTTCGACTTCCTGACCAA
GCCGGTCGACCTGACCCGGTTGCGTGAACTGGTCGCCAGCGCCCTGCGCCTGCCACCGGTTGCCGCCCCCGGCACAACCA
TCGAGCGCTGCCTGCTGGGCGAATCACCGCCCATGCGCAACGTGCGCAAACAGATCGAAAAACTCGCCCGCAGCCAGGCG
CCGGTGTACATCAGCGGCGAGTCGGGCTGTGGCAAGGAGTTGGTGGCCCGGCTGATCCACGAACAAGGTCCCCGTTCCAA
TCTCGGCTTTGTGCCGGTCAACTGTGGAGCAATTCCCACGGAGCTGATGGAAAGCGAGTTTTTCGGCCACCGCAAAGGCA
GTTTCAGCGGCGCCATCGAAGACAAACCCGGGCTGTTCCAGGCCGCCCATGGCGGCACGCTGTTCCTCGACGAGGTGGCT
GACCTGCCGCTGGCCATGCAAGTCAAACTGCTGCGGGCCATCCAGGAAAAAGCCGTGCGCGCCGTCGGCGGCCAACAGGA
AGAAGTGGTGGACGTACGCATCCTTTGCGCCACCCACAAGGACCTGGACGCCGAAGTCGCCGCCGGGCGTTTTCGCCAGG
ACCTGTACTATCGGCTGAACGTCATCGAACTGCGCGTCCCGCCCCTGCGCGAACGCCGCGAAGACATCGAGCCCCTGGCC
AACCACATGCTCCAACGCCTGTCGGCCAACACCGCCAGCCCTGCCGTCAAACTCCACCCCCAGGCCCTGGAGGCCCTTCG
CAACTACCGTTTCCCAGGAAACGTGCGGGAGCTGGAGAACATGCTCGAACGGGCCTACACCCTTTGCGAGCACCAACAGA
TCGAAGCCGACGACCTGCGCCTGGCCGACAGCAATAACGCCACCGACGCCACCAGCGCTGACCTGGTGCAGGTCGACAAC
CTGGAAGACTACCTGGAAGACGTCGAACGCAAACTCATCCTCCAGGCCCTGGAAGAAACCCGCTGGAACCGCACGGCGGC
GGCCCAGCGGTTGAAACTGTCGTTTCGTTCGATGCGGTATCGGTTGAAGAAGCTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Sigma-54 interaction domain (Sigma54_activat) (138-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.279	99.107	0.786
pilR	Acinetobacter baumannii strain A118	49.455	100	0.507