Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   V5F23_RS19790 Genome accession   NZ_CP144758
Coordinates   4498310..4500556 (-) Length   748 a.a.
NCBI ID   WP_338496216.1    Uniprot ID   -
Organism   Pseudomonas sp. WP18     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4493310..4505556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F23_RS19755 (V5F23_19755) murB 4493692..4494711 (-) 1020 WP_047736431.1 UDP-N-acetylmuramate dehydrogenase -
  V5F23_RS19760 (V5F23_19760) - 4494708..4495172 (-) 465 WP_042728813.1 low molecular weight protein-tyrosine-phosphatase -
  V5F23_RS19765 (V5F23_19765) kdsB 4495172..4495936 (-) 765 WP_212802888.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V5F23_RS19770 (V5F23_19770) - 4495933..4496118 (-) 186 WP_042728811.1 Trm112 family protein -
  V5F23_RS19775 (V5F23_19775) lpxK 4496144..4497154 (-) 1011 WP_212802889.1 tetraacyldisaccharide 4'-kinase -
  V5F23_RS19780 (V5F23_19780) - 4497154..4497582 (-) 429 WP_042728809.1 biopolymer transporter ExbD -
  V5F23_RS19785 (V5F23_19785) exbB 4497579..4498214 (-) 636 WP_161796100.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V5F23_RS19790 (V5F23_19790) comA 4498310..4500556 (-) 2247 WP_338496216.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V5F23_RS19795 (V5F23_19795) - 4500701..4501216 (+) 516 WP_042728806.1 DUF2062 domain-containing protein -
  V5F23_RS19800 (V5F23_19800) - 4501310..4502089 (-) 780 WP_042728805.1 ABC transporter permease -
  V5F23_RS19805 (V5F23_19805) - 4502086..4503018 (-) 933 WP_042728804.1 ABC transporter ATP-binding protein -
  V5F23_RS19810 (V5F23_19810) - 4503151..4503774 (-) 624 WP_042728803.1 glutathione S-transferase -
  V5F23_RS19815 (V5F23_19815) - 4503821..4504480 (-) 660 WP_212802891.1 transglutaminase family protein -

Sequence

Protein


Download         Length: 748 a.a.        Molecular weight: 81165.17 Da        Isoelectric Point: 10.0025

>NTDB_id=934754 V5F23_RS19790 WP_338496216.1 4498310..4500556(-) (comA) [Pseudomonas sp. WP18]
MRTGLVALALGLVAPVFFPALPPPWLMVALPVLALMAVPFRTYPLGFFLGGLAWACLSAQCALDDRLPAALEGETRWVEG
RVVGLPQYSDGVVRFELADAHGRRDRLPALMRLAWFGGPPVSSGERWRLAVKLKRPAGLLNPHGFDYQAWLLSRGIGATG
TIKDCRLLQPAQGAWRDGVRQALARVDAQGRSGALMALVLGDGAGLSREDWRVLQDTGTVHLLVISGQHIGLLAGLVYLM
VAGAARHGLWPARLPWLPWACGLAFMAALSYGLLAGFEVPVRRACAMIGLVLLWRLRFKPAASWWAWLLAFDGVLLFDPL
ACLRPGFWLSFAAVAILMFTFGGRLGPWRWWQTWTRAQWLVALGLCPLLLILGLPVSLSGPLANLLAVPWISLLVLPPAL
LGTLLLPVPFVGEGLLWIAGGLLDVWFRGLAWVAGQLPAWTPAAVPPWALGIAALGAFVLLLPKGVPLRLLGWPMLSLMV
FAPRENLPHGQAEIWQLDVGQGLAVLVRTHGHALLYDAGPRWGDADAGERVVLPTLRKLGVRELDLMLLSHADADHAGGA
LAVRNGLPTRQLISGDPDALPEALHAGPCDSGQRWEWDGVGFALWQWSSAEDSNQKSCVLRVEAGGERLLLTGDIDRHAE
RALLDGPLAVPIHWLAAPHHGSRSSSSMALLARLKPHSVLISRGQGNAFGHPHPQVMARYRRAGMTIYDSAEQGAIRLQL
GAFARPRTEAGHRRYWRDPLPAGHPGRH

Nucleotide


Download         Length: 2247 bp        

>NTDB_id=934754 V5F23_RS19790 WP_338496216.1 4498310..4500556(-) (comA) [Pseudomonas sp. WP18]
ATGCGCACAGGATTGGTCGCGCTTGCGCTGGGGCTGGTGGCCCCGGTTTTTTTCCCGGCGTTGCCGCCGCCGTGGCTGAT
GGTGGCGCTGCCGGTGCTGGCACTGATGGCCGTGCCGTTTCGAACCTACCCGCTGGGCTTCTTCCTGGGCGGATTGGCCT
GGGCCTGTCTGTCGGCGCAGTGTGCGCTGGACGATCGGTTGCCTGCCGCGCTGGAGGGAGAAACCCGTTGGGTCGAAGGG
CGTGTCGTCGGCTTGCCGCAATACAGCGACGGCGTGGTGCGCTTCGAACTGGCCGATGCCCATGGTCGTCGCGACCGGTT
GCCGGCGTTGATGCGCCTCGCCTGGTTCGGTGGGCCGCCGGTCAGCAGTGGCGAGCGTTGGCGATTGGCGGTCAAGCTCA
AGCGGCCCGCCGGGCTGCTGAACCCTCACGGTTTCGACTATCAGGCCTGGCTGTTGAGCCGGGGCATCGGCGCCACCGGA
ACCATCAAGGACTGTCGCCTGCTGCAGCCGGCTCAGGGCGCTTGGCGTGACGGGGTGCGCCAGGCGCTGGCGCGGGTCGA
TGCCCAGGGCCGCTCCGGTGCGCTGATGGCCTTGGTGCTGGGGGATGGTGCCGGGTTGAGCCGCGAAGACTGGCGGGTGT
TGCAAGACACCGGCACGGTTCATCTGCTGGTGATCTCCGGGCAACACATTGGCCTGCTCGCCGGCCTGGTGTACCTGATG
GTGGCGGGTGCGGCGCGCCATGGCCTGTGGCCGGCAAGGCTGCCATGGTTGCCTTGGGCCTGCGGCCTGGCCTTCATGGC
GGCGCTGAGCTACGGCTTGCTGGCCGGGTTCGAGGTGCCGGTGCGGCGGGCCTGCGCGATGATCGGCCTGGTGTTGCTGT
GGCGCTTGCGCTTCAAGCCTGCGGCCTCCTGGTGGGCCTGGTTGCTGGCGTTCGACGGGGTGCTGTTGTTCGATCCGCTG
GCCTGCCTGCGGCCCGGATTCTGGCTGTCGTTCGCCGCCGTCGCGATCCTGATGTTCACCTTTGGCGGCCGCCTGGGGCC
CTGGCGCTGGTGGCAGACCTGGACTCGCGCCCAATGGCTGGTTGCGCTCGGCCTGTGTCCGTTGCTGTTGATCCTGGGGC
TGCCGGTGAGCCTCAGCGGGCCGCTGGCGAACCTGCTGGCGGTGCCCTGGATCAGCCTGCTGGTGCTGCCGCCGGCATTG
CTCGGCACGCTGTTGTTGCCGGTGCCGTTCGTGGGCGAGGGCCTGCTATGGATCGCTGGCGGGCTGCTCGACGTATGGTT
CAGGGGGCTGGCGTGGGTGGCCGGGCAACTGCCCGCCTGGACCCCGGCGGCGGTTCCGCCCTGGGCCTTGGGCATCGCCG
CCCTCGGTGCGTTTGTGCTGCTGTTGCCCAAGGGCGTGCCGCTGCGTCTTTTGGGTTGGCCAATGTTGAGCTTGATGGTC
TTTGCACCGCGGGAAAACCTGCCGCACGGGCAGGCCGAAATCTGGCAACTGGACGTGGGCCAGGGGCTGGCGGTGCTGGT
GCGTACCCATGGCCATGCCCTGCTTTATGACGCCGGGCCACGCTGGGGCGACGCCGATGCGGGCGAGCGTGTCGTGCTGC
CCACCTTGCGCAAGCTGGGGGTGCGCGAATTGGACCTGATGCTGCTCAGCCATGCCGATGCCGATCATGCCGGTGGTGCC
CTGGCGGTGCGCAACGGGCTGCCCACCCGGCAACTGATCAGCGGCGATCCCGACGCGCTGCCCGAGGCGTTGCACGCCGG
GCCTTGTGACAGTGGCCAGCGCTGGGAGTGGGACGGGGTCGGTTTCGCGCTGTGGCAATGGTCATCGGCCGAGGACAGCA
ACCAGAAGTCCTGCGTGTTGCGGGTGGAGGCGGGCGGCGAGCGCTTGCTGTTGACCGGCGACATCGACCGCCATGCCGAG
CGCGCCTTGCTCGATGGCCCCCTGGCGGTGCCGATCCACTGGCTGGCCGCCCCTCATCATGGCAGCCGCAGCTCATCGTC
GATGGCGCTGCTGGCACGTCTCAAGCCTCACTCGGTGCTGATTTCCCGCGGACAGGGCAATGCCTTCGGCCATCCACATC
CCCAGGTGATGGCCCGTTACCGCCGGGCGGGGATGACGATCTACGACAGTGCCGAACAGGGTGCCATTCGTCTGCAACTG
GGGGCCTTCGCCCGGCCGCGTACCGAGGCCGGGCATCGCCGCTACTGGCGTGATCCACTGCCCGCCGGCCACCCGGGCCG
ACATTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-164)

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-675)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.453

95.722

0.588