Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   V5F23_RS19785 Genome accession   NZ_CP144758
Coordinates   4497579..4498214 (-) Length   211 a.a.
NCBI ID   WP_161796100.1    Uniprot ID   -
Organism   Pseudomonas sp. WP18     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4492579..4503214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F23_RS19750 (V5F23_19750) - 4492956..4493426 (-) 471 WP_042728815.1 (2Fe-2S)-binding protein -
  V5F23_RS19755 (V5F23_19755) murB 4493692..4494711 (-) 1020 WP_047736431.1 UDP-N-acetylmuramate dehydrogenase -
  V5F23_RS19760 (V5F23_19760) - 4494708..4495172 (-) 465 WP_042728813.1 low molecular weight protein-tyrosine-phosphatase -
  V5F23_RS19765 (V5F23_19765) kdsB 4495172..4495936 (-) 765 WP_212802888.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V5F23_RS19770 (V5F23_19770) - 4495933..4496118 (-) 186 WP_042728811.1 Trm112 family protein -
  V5F23_RS19775 (V5F23_19775) lpxK 4496144..4497154 (-) 1011 WP_212802889.1 tetraacyldisaccharide 4'-kinase -
  V5F23_RS19780 (V5F23_19780) - 4497154..4497582 (-) 429 WP_042728809.1 biopolymer transporter ExbD -
  V5F23_RS19785 (V5F23_19785) exbB 4497579..4498214 (-) 636 WP_161796100.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V5F23_RS19790 (V5F23_19790) comA 4498310..4500556 (-) 2247 WP_338496216.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V5F23_RS19795 (V5F23_19795) - 4500701..4501216 (+) 516 WP_042728806.1 DUF2062 domain-containing protein -
  V5F23_RS19800 (V5F23_19800) - 4501310..4502089 (-) 780 WP_042728805.1 ABC transporter permease -
  V5F23_RS19805 (V5F23_19805) - 4502086..4503018 (-) 933 WP_042728804.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22884.98 Da        Isoelectric Point: 7.3613

>NTDB_id=934753 V5F23_RS19785 WP_161796100.1 4497579..4498214(-) (exbB) [Pseudomonas sp. WP18]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGDKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=934753 V5F23_RS19785 WP_161796100.1 4497579..4498214(-) (exbB) [Pseudomonas sp. WP18]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGTGTGACCCCGGAGCATCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTGAACAAGGACAAGCTCAAGGAACTGCGCGCCAGTTCGCCCTTGGGGGAAATCCTCGCCGCCGGCCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATCCATGAGCTGGAGCGCTACAT
CAATGCCCTGGGCACCATTGCCGCCATGTCCCCGTTGCTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATCTTCA
GCGCCTTCACCGGCTCCGGCATGACCACCAACGCCGCCGTGCTGGCGGGGGGCATCTCCAAGGCGCTGATCACCACCGCT
GCCGGCCTGATGGTGGGTATTCCGTCAGTGTTTTTCCATCGCTTCCTGCAACGGCGCGTCGACGAGCTCGTGGTGGGCAT
GGAGCAGGAGGCCATCAAGCTGGTCGAGGTGGTGCAGGGCGACCGTGATGTAGACCTGGCCGGGGACAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.238

99.526

0.848