Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   V4U93_RS06955 Genome accession   NZ_CP144755
Coordinates   1372595..1373872 (-) Length   425 a.a.
NCBI ID   WP_061827030.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain DCF0720     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1367595..1378872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4U93_RS06950 (V4U93_06950) - 1370860..1372569 (-) 1710 WP_011374954.1 proline--tRNA ligase -
  V4U93_RS06955 (V4U93_06955) eeP 1372595..1373872 (-) 1278 WP_061827030.1 RIP metalloprotease RseP Regulator
  V4U93_RS06960 (V4U93_06960) - 1374078..1374866 (-) 789 WP_016265347.1 phosphatidate cytidylyltransferase -
  V4U93_RS06965 (V4U93_06965) - 1374897..1375652 (-) 756 WP_061827029.1 isoprenyl transferase -
  V4U93_RS06970 (V4U93_06970) - 1375820..1378567 (+) 2748 WP_061827028.1 YhgE/Pip domain-containing protein -

Sequence

Protein


Download         Length: 425 a.a.        Molecular weight: 46679.36 Da        Isoelectric Point: 9.6558

>NTDB_id=934727 V4U93_RS06955 WP_061827030.1 1372595..1373872(-) (eeP) [Latilactobacillus sakei subsp. sakei strain DCF0720]
MAAIIAFIIIFGILVVVHEFGHFYMAKRSGILVREFSVGMGPKLFATRKNGTTYTIRWLPLGGYVRMAGMADDESEIEAG
TQATLILDEQGRVQQINTSDKVTTLNGVPFQIAKTDLQKELWVEGYEGGDESEMKRYPVLHDATIIEEDGTEVQIAPVDV
QFQSATLINRMLTNFAGPFNNFILAILAFILFAFLSGGVPQQSNQIGTVQKNSAAQKAGLKANDRLLKVDNKKVASFTDF
SAIISEHPNDTVAVRVQRGATEKTIKVTPKAVKVANQKEKVGQVGVTQKVKMDHSLKAKISYGFTQAWSIASQIFKILGS
FLTGGFSLDKLSGPVGMYSMTTQFTQQGFNALVYFLAFLSLNLGIMNLIPIPALDGGKLVLNIIEAIRRKPISPEKEGIV
TLIGVGIMVLLMVLVTWNDIQRFFF

Nucleotide


Download         Length: 1278 bp        

>NTDB_id=934727 V4U93_RS06955 WP_061827030.1 1372595..1373872(-) (eeP) [Latilactobacillus sakei subsp. sakei strain DCF0720]
TTGGCTGCAATTATTGCGTTTATCATCATCTTTGGTATTTTAGTAGTCGTTCATGAATTTGGGCATTTTTACATGGCTAA
GCGCTCAGGCATTTTGGTGCGAGAGTTTTCTGTCGGCATGGGACCTAAATTATTTGCAACTCGCAAAAACGGCACAACTT
ACACCATCCGGTGGTTACCATTAGGTGGTTACGTTCGAATGGCGGGAATGGCCGACGATGAATCTGAAATTGAAGCTGGC
ACACAAGCGACTTTAATTTTGGACGAACAAGGACGCGTTCAACAGATTAATACAAGTGACAAGGTCACCACGTTAAACGG
GGTACCTTTCCAAATTGCTAAAACAGATTTACAAAAAGAATTGTGGGTCGAAGGTTACGAAGGCGGCGACGAGTCAGAAA
TGAAACGTTATCCCGTCTTACATGATGCGACGATTATCGAAGAAGACGGAACGGAAGTGCAAATCGCACCCGTGGATGTC
CAATTCCAATCAGCAACGTTGATTAATCGGATGTTAACGAACTTTGCCGGACCATTTAATAACTTCATCCTCGCAATTCT
AGCCTTTATCCTCTTCGCTTTTCTAAGCGGGGGTGTGCCGCAGCAATCCAATCAAATTGGCACGGTACAAAAGAATTCTG
CTGCTCAAAAGGCAGGCTTAAAAGCCAACGATCGTCTTTTGAAAGTTGATAACAAAAAAGTAGCGAGCTTCACTGACTTT
AGTGCGATAATTTCAGAACACCCTAACGACACCGTTGCGGTACGCGTTCAACGGGGCGCAACTGAAAAGACAATCAAGGT
GACACCAAAAGCTGTCAAAGTGGCTAACCAAAAAGAAAAGGTTGGTCAAGTGGGAGTCACACAAAAAGTCAAAATGGATC
ATAGCCTAAAGGCCAAGATTTCTTACGGCTTTACACAAGCTTGGTCAATTGCCAGTCAGATTTTCAAGATCCTCGGGTCA
TTTTTAACCGGTGGGTTCTCACTAGATAAATTATCGGGGCCGGTCGGCATGTATTCAATGACGACCCAATTTACCCAACA
AGGCTTTAATGCGTTAGTTTATTTCTTAGCGTTCTTATCACTTAATTTGGGGATTATGAATCTAATTCCGATTCCGGCGT
TAGATGGTGGTAAGTTAGTCTTGAACATTATTGAAGCGATTCGTCGCAAACCTATTTCACCTGAAAAAGAAGGCATCGTG
ACATTAATCGGTGTCGGTATTATGGTGTTATTAATGGTCTTAGTCACGTGGAATGATATACAACGATTTTTCTTTTAG

Domains

Predicted by InterproScan.

PDZ domain (PDZ_6)

(206-258)

Peptidase family M50 (Peptidase_M50)

(6-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMD-9

48.611

100

0.494
  eeP Streptococcus thermophilus LMG 18311

48.611

100

0.494